RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 NBPF5PQ86XG9 351 aaPredicted RBP11.41□□□□□ -0.58
SS18-205ENST00000542420 UBAC1Q9BSL1 405 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.41□□□□□ -0.58
SS18-205ENST00000542420 ARPP21Q9UBL0 812 aaPredicted RBP11.41□□□□□ -0.58
SS18-205ENST00000542420 CLIC4Q9Y696 253 aa11.41□□□□□ -0.58
SS18-205ENST00000542420 DDX60LQ5H9U9 1706 aaKnown RBP11.4□□□□□ -0.58
SS18-205ENST00000542420 A0A0G2JS52 829 aa11.4□□□□□ -0.58
SS18-205ENST00000542420 RANBP6O60518 1105 aaKnown RBP11.4□□□□□ -0.58
SS18-205ENST00000542420 BMP15O95972 392 aa11.4□□□□□ -0.58
SS18-205ENST00000542420 HIBADHP31937 336 aaKnown RBP11.4□□□□□ -0.58
SS18-205ENST00000542420 NBPF11Q86T75 865 aa11.4□□□□□ -0.58
SS18-205ENST00000542420 ZNF654Q8IZM8 581 aa11.4□□□□□ -0.58
SS18-205ENST00000542420 CRACR2BQ8N4Y2 399 aaPredicted RBP11.4□□□□□ -0.58
SS18-205ENST00000542420 ZNF579Q8NAF0 562 aaKnown RBP11.4□□□□□ -0.58
SS18-205ENST00000542420 NSUN4Q96CB9 384 aaKnown RBP11.4□□□□□ -0.58
SS18-205ENST00000542420 MAP3K14Q99558 947 aa11.4□□□□□ -0.58
SS18-205ENST00000542420 CRNKL1Q9BZJ0 848 aaKnown RBP11.4□□□□□ -0.58
SS18-205ENST00000542420 KIAA1468Q9P260 1216 aa11.4□□□□□ -0.58
SS18-205ENST00000542420 CCNL1Q9UK58 526 aaPredicted RBP11.4□□□□□ -0.58
SS18-205ENST00000542420 CEP131Q9UPN4 1083 aa11.4□□□□□ -0.58
SS18-205ENST00000542420 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.4□□□□□ -0.58
SS18-205ENST00000542420 ROBO3Q96MS0 1386 aa11.4□□□□□ -0.59
SS18-205ENST00000542420 RESP18Q5W5W9 173 aa11.4□□□□□ -0.59
SS18-205ENST00000542420 IQCA1Q86XH1 822 aa11.4□□□□□ -0.59
SS18-205ENST00000542420 FANCBQ8NB91 859 aa11.4□□□□□ -0.59
SS18-205ENST00000542420 CELF1Q92879 486 aaKnown RBP11.4□□□□□ -0.59
SS18-205ENST00000542420 PRIMPOLQ96LW4 560 aa11.4□□□□□ -0.59
SS18-205ENST00000542420 DNAJC25Q9H1X3 360 aa11.4□□□□□ -0.59
SS18-205ENST00000542420 USP21Q9UK80 565 aa11.4□□□□□ -0.59
SS18-205ENST00000542420 TACC3Q9Y6A5 838 aa11.4□□□□□ -0.59
SS18-205ENST00000542420 AP5Z1O43299 807 aa11.39□□□□□ -0.59
SS18-205ENST00000542420 PRKAB2O43741 272 aa11.39□□□□□ -0.59
SS18-205ENST00000542420 GYG1P46976 350 aa11.39□□□□□ -0.59
SS18-205ENST00000542420 TPM4P67936 248 aa11.39□□□□□ -0.59
SS18-205ENST00000542420 CEBPZQ03701 1054 aaKnown RBP11.39□□□□□ -0.59
SS18-205ENST00000542420 GNL2Q13823 731 aaKnown RBP11.39□□□□□ -0.59
SS18-205ENST00000542420 UTP14CQ5TAP6 766 aaKnown RBP11.39□□□□□ -0.59
SS18-205ENST00000542420 C3orf67Q6ZVT6 689 aa11.39□□□□□ -0.59
SS18-205ENST00000542420 LUZP1Q86V48 1076 aa11.39□□□□□ -0.59
SS18-205ENST00000542420 NOSTRINQ8IVI9 506 aa11.39□□□□□ -0.59
SS18-205ENST00000542420 WDR66Q8TBY9 1149 aa11.39□□□□□ -0.59
SS18-205ENST00000542420 C8orf37Q96NL8 207 aa11.39□□□□□ -0.59
SS18-205ENST00000542420 FTOQ9C0B1 505 aaKnown RBP eCLIP11.39□□□□□ -0.59
SS18-205ENST00000542420 HOOK1Q9UJC3 728 aaKnown RBP11.39□□□□□ -0.59
SS18-205ENST00000542420 SMTNL1A8MU46 457 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 IKBKBO14920 756 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 GNPATO15228 680 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 PRPF3O43395 683 aaKnown RBP11.38□□□□□ -0.59
SS18-205ENST00000542420 TM4SF1P30408 202 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 NLRP12P59046 1061 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 GSTO1P78417 241 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 ZRSR1Q15695 479 aaKnown RBP11.38□□□□□ -0.59
SS18-205ENST00000542420 KIAA1524Q8TCG1 905 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 CERKQ8TCT0 537 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 ZSCAN10Q96SZ4 725 aaPredicted RBP11.38□□□□□ -0.59
SS18-205ENST00000542420 SDF4Q9BRK5 362 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 TUBE1Q9UJT0 475 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 LTBP1Q14766 1721 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 UBAP1LF5GYI3 381 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 ZNF202O95125 648 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 POLR3DP05423 398 aaPredicted RBP11.38□□□□□ -0.59
SS18-205ENST00000542420 NDUFA8P51970 172 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 GRAPQ13588 217 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 NOLC1Q14978 699 aaKnown RBP eCLIP11.38□□□□□ -0.59
SS18-205ENST00000542420 CT47A1Q5JQC4 288 aaPredicted RBP11.38□□□□□ -0.59
SS18-205ENST00000542420 GRAPLQ8TC17 118 aaPredicted RBP11.38□□□□□ -0.59
SS18-205ENST00000542420 SLC26A6Q9BXS9 759 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 IMPACTQ9P2X3 320 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 ABCF2Q9UG63 623 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 ZHX1Q9UKY1 873 aaPredicted RBP11.38□□□□□ -0.59
SS18-205ENST00000542420 TNKSO95271 1327 aa11.38□□□□□ -0.59
SS18-205ENST00000542420 BECN2A8MW95 431 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 SNAP23O00161 211 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 PFKFB1P16118 471 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 FOSBP53539 338 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 PIP4K2BP78356 416 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 QSER1Q2KHR3 1735 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 OTUD7BQ6GQQ9 843 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 TMC4Q7Z404 712 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 CATIPQ7Z7H3 387 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 ADGRA1Q86SQ6 560 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 ANKS1AQ92625 1134 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 TRIM5Q9C035 493 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 SENP2Q9HC62 589 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 NRXN2Q9P2S2 1712 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 XDHP47989 1333 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 SYKP43405 635 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 PPP4CP60510 307 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 DMTNQ08495 405 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 TRAPPC3LQ5T215 181 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 KANK3Q6NY19 840 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 DHX40Q8IX18 779 aaKnown RBP11.37□□□□□ -0.59
SS18-205ENST00000542420 KRI1Q8N9T8 703 aaKnown RBP11.37□□□□□ -0.59
SS18-205ENST00000542420 MIGA1Q8NAN2 632 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 NKX2-3Q8TAU0 364 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 ARHGEF1Q92888 912 aaKnown RBP11.37□□□□□ -0.59
SS18-205ENST00000542420 KCND1Q9NSA2 647 aa11.37□□□□□ -0.59
SS18-205ENST00000542420 LDHCP07864 332 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 GSDMDP57764 484 aa11.36□□□□□ -0.59
SS18-205ENST00000542420 AKAP17AQ02040 695 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms