RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 SGMS1Q86VZ5 419 aa17.05■□□□□ 0.32
DDX55-209ENST00000542286 GRAMD1CQ8IYS0 662 aa17.05■□□□□ 0.32
DDX55-209ENST00000542286 TRMT1Q9NXH9 659 aaKnown RBP17.05■□□□□ 0.32
DDX55-209ENST00000542286 WDR19Q8NEZ3 1342 aa17.05■□□□□ 0.32
DDX55-209ENST00000542286 MAGEB6P1A0A0J9YX57 407 aa17.05■□□□□ 0.32
DDX55-209ENST00000542286 TOB1P50616 345 aaPredicted RBP17.05■□□□□ 0.32
DDX55-209ENST00000542286 TRIM29Q14134 588 aa17.05■□□□□ 0.32
DDX55-209ENST00000542286 ALX1Q15699 326 aa17.05■□□□□ 0.32
DDX55-209ENST00000542286 CPLX2Q6PUV4 134 aaKnown RBP17.05■□□□□ 0.32
DDX55-209ENST00000542286 DIS3L2Q8IYB7 885 aaKnown RBP17.05■□□□□ 0.32
DDX55-209ENST00000542286 FAM84BQ96KN1 310 aaPredicted RBP17.05■□□□□ 0.32
DDX55-209ENST00000542286 GPR101Q96P66 508 aaPredicted RBP17.05■□□□□ 0.32
DDX55-209ENST00000542286 PHLPP1O60346 1717 aa17.04■□□□□ 0.32
DDX55-209ENST00000542286 ECM29Q5VYK3 1845 aa17.04■□□□□ 0.32
DDX55-209ENST00000542286 SYKP43405 635 aa17.04■□□□□ 0.32
DDX55-209ENST00000542286 LONRF3Q496Y0 759 aa17.04■□□□□ 0.32
DDX55-209ENST00000542286 PDILTQ8N807 584 aa17.04■□□□□ 0.32
DDX55-209ENST00000542286 NACAP1Q9BZK3 213 aa17.04■□□□□ 0.32
DDX55-209ENST00000542286 CDKL5O76039 1030 aa17.04■□□□□ 0.32
DDX55-209ENST00000542286 SMC2O95347 1197 aa17.04■□□□□ 0.32
DDX55-209ENST00000542286 CYP2D6P10635 497 aa17.04■□□□□ 0.32
DDX55-209ENST00000542286 ZRSR1Q15695 479 aaKnown RBP17.04■□□□□ 0.32
DDX55-209ENST00000542286 USP49Q70CQ1 688 aa17.04■□□□□ 0.32
DDX55-209ENST00000542286 TNKSO95271 1327 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 GOLGA8FQ08AF8 430 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 GOLGA8DPQ0D2H9 430 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 EARS2Q5JPH6 523 aaKnown RBP17.03■□□□□ 0.32
DDX55-209ENST00000542286 NBPF11Q86T75 865 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 FOXP4Q8IVH2 680 aaPredicted RBP17.03■□□□□ 0.32
DDX55-209ENST00000542286 ZNF654Q8IZM8 581 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 ZNF592Q92610 1267 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 CDC5LQ99459 802 aaKnown RBP17.03■□□□□ 0.32
DDX55-209ENST00000542286 AATFQ9NY61 560 aaKnown RBP eCLIP17.03■□□□□ 0.32
DDX55-209ENST00000542286 IFNKQ9P0W0 207 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 VPS54Q9P1Q0 977 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 PCDHB6Q9Y5E3 794 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 CHD4Q14839 1912 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 MYH2Q9UKX2 1941 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 CMA1P23946 247 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 PRDX5P30044 214 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 LIFRP42702 1097 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 FAM47AQ5JRC9 791 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 STAG1Q8WVM7 1258 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 XPO4Q9C0E2 1151 aaKnown RBP17.03■□□□□ 0.32
DDX55-209ENST00000542286 BCL9LQ86UU0 1499 aa17.03■□□□□ 0.32
DDX55-209ENST00000542286 WNT7AO00755 349 aa17.02■□□□□ 0.32
DDX55-209ENST00000542286 PLEKHA8P1O95397 391 aa17.02■□□□□ 0.32
DDX55-209ENST00000542286 FMNL1O95466 1100 aaPredicted RBP17.02■□□□□ 0.32
DDX55-209ENST00000542286 NAA30Q147X3 362 aaPredicted RBP17.02■□□□□ 0.32
DDX55-209ENST00000542286 ZNF827Q17R98 1081 aa17.02■□□□□ 0.32
DDX55-209ENST00000542286 LRRC8AQ8IWT6 810 aa17.02■□□□□ 0.32
DDX55-209ENST00000542286 AK7Q96M32 723 aa17.02■□□□□ 0.32
DDX55-209ENST00000542286 RIOK1Q9BRS2 568 aaKnown RBP17.02■□□□□ 0.32
DDX55-209ENST00000542286 UBAC1Q9BSL1 405 aa17.02■□□□□ 0.32
DDX55-209ENST00000542286 KRT23Q9C075 422 aa17.02■□□□□ 0.32
DDX55-209ENST00000542286 CICQ96RK0 1608 aaPredicted RBP17.02■□□□□ 0.32
DDX55-209ENST00000542286 WNK3Q9BYP7 1800 aa17.02■□□□□ 0.32
DDX55-209ENST00000542286 GNPATO15228 680 aa17.02■□□□□ 0.31
DDX55-209ENST00000542286 PDE4CQ08493 712 aa17.02■□□□□ 0.31
DDX55-209ENST00000542286 NGLY1Q96IV0 654 aa17.02■□□□□ 0.31
DDX55-209ENST00000542286 VEGFAP15692 232 aaPredicted RBP17.01■□□□□ 0.31
DDX55-209ENST00000542286 ZNF652Q9Y2D9 606 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 DOCK2Q92608 1830 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 ERICH2A1L162 156 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 USP17L12C9JPN9 530 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 USP17L21D6R901 530 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 ADAMTS3O15072 1205 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 METTL16Q86W50 562 aaKnown RBP17.01■□□□□ 0.31
DDX55-209ENST00000542286 NOSTRINQ8IVI9 506 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 ENAHQ8N8S7 591 aaPredicted RBP17.01■□□□□ 0.31
DDX55-209ENST00000542286 FANCBQ8NB91 859 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 CDCA7Q9BWT1 371 aaPredicted RBP17.01■□□□□ 0.31
DDX55-209ENST00000542286 CABP5Q9NP86 173 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 MTMR7Q9Y216 660 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 PNPLA7Q6ZV29 1317 aa17.01■□□□□ 0.31
DDX55-209ENST00000542286 IFNAR1P17181 557 aa17■□□□□ 0.31
DDX55-209ENST00000542286 GABPB1Q06547 395 aaPredicted RBP17■□□□□ 0.31
DDX55-209ENST00000542286 CRACR2BQ8N4Y2 399 aaPredicted RBP17■□□□□ 0.31
DDX55-209ENST00000542286 DPF2Q92785 391 aa17■□□□□ 0.31
DDX55-209ENST00000542286 CNNM2Q9H8M5 875 aa17■□□□□ 0.31
DDX55-209ENST00000542286 ARAP2Q8WZ64 1704 aa17■□□□□ 0.31
DDX55-209ENST00000542286 MMP1P03956 469 aa17■□□□□ 0.31
DDX55-209ENST00000542286 PRR29P0C7W0 189 aa17■□□□□ 0.31
DDX55-209ENST00000542286 SKILP12757 684 aa17■□□□□ 0.31
DDX55-209ENST00000542286 CASP1P29466 404 aa17■□□□□ 0.31
DDX55-209ENST00000542286 NCAPHQ15003 741 aa17■□□□□ 0.31
DDX55-209ENST00000542286 TPD52L1Q16890 204 aaPredicted RBP17■□□□□ 0.31
DDX55-209ENST00000542286 THRAP3Q9Y2W1 955 aaKnown RBP17■□□□□ 0.31
DDX55-209ENST00000542286 ZBTB22O15209 634 aa17■□□□□ 0.31
DDX55-209ENST00000542286 SARM1Q6SZW1 724 aa17■□□□□ 0.31
DDX55-209ENST00000542286 TMC6Q7Z403 805 aa17■□□□□ 0.31
DDX55-209ENST00000542286 NBPF5PQ86XG9 351 aaPredicted RBP17■□□□□ 0.31
DDX55-209ENST00000542286 MECOMQ03112 1051 aa16.99■□□□□ 0.31
DDX55-209ENST00000542286 PDE4BQ07343 736 aa16.99■□□□□ 0.31
DDX55-209ENST00000542286 SART3Q15020 963 aaKnown RBP16.99■□□□□ 0.31
DDX55-209ENST00000542286 CAVIN4Q5BKX8 364 aa16.99■□□□□ 0.31
DDX55-209ENST00000542286 BSDC1Q9NW68 430 aaPredicted RBP16.99■□□□□ 0.31
DDX55-209ENST00000542286 ZNF804BA4D1E1 1349 aa16.99■□□□□ 0.31
DDX55-209ENST00000542286 NPHP1O15259 732 aa16.99■□□□□ 0.31
DDX55-209ENST00000542286 SLFN14P0C7P3 912 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms