RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SOX1O00570 391 aaPredicted RBP10.03□□□□□ -0.8
NEDD8-207ENST00000533242 TNPO2O14787 897 aaKnown RBP10.03□□□□□ -0.8
NEDD8-207ENST00000533242 LDHBP07195 334 aaKnown RBP10.03□□□□□ -0.8
NEDD8-207ENST00000533242 ELNP15502 786 aa10.03□□□□□ -0.8
NEDD8-207ENST00000533242 PTPRAP18433 802 aa10.03□□□□□ -0.8
NEDD8-207ENST00000533242 DIXDC1Q155Q3 683 aa10.03□□□□□ -0.8
NEDD8-207ENST00000533242 GADL1Q6ZQY3 521 aa10.03□□□□□ -0.8
NEDD8-207ENST00000533242 PAK6Q9NQU5 681 aaPredicted RBP10.03□□□□□ -0.8
NEDD8-207ENST00000533242 ZHX2Q9Y6X8 837 aa10.03□□□□□ -0.8
NEDD8-207ENST00000533242 RFX5P48382 616 aaPredicted RBP10.02□□□□□ -0.8
NEDD8-207ENST00000533242 MAP3K10Q02779 954 aa10.02□□□□□ -0.8
NEDD8-207ENST00000533242 CHD1LQ86WJ1 897 aa10.02□□□□□ -0.8
NEDD8-207ENST00000533242 ZFPM1Q8IX07 1006 aa10.02□□□□□ -0.8
NEDD8-207ENST00000533242 ARHGAP45Q92619 1136 aa10.02□□□□□ -0.8
NEDD8-207ENST00000533242 DEFB118Q96PH6 123 aa10.02□□□□□ -0.8
NEDD8-207ENST00000533242 IDI2Q9BXS1 227 aa10.02□□□□□ -0.8
NEDD8-207ENST00000533242 GNL3LQ9NVN8 582 aaKnown RBP10.02□□□□□ -0.8
NEDD8-207ENST00000533242 DDX60LQ5H9U9 1706 aaKnown RBP10.02□□□□□ -0.8
NEDD8-207ENST00000533242 RFX7Q2KHR2 1363 aa10.02□□□□□ -0.8
NEDD8-207ENST00000533242 PTPRCP08575 1304 aa10.02□□□□□ -0.81
NEDD8-207ENST00000533242 SEMA3EO15041 775 aa10.02□□□□□ -0.81
NEDD8-207ENST00000533242 PRDX5P30044 214 aa10.02□□□□□ -0.81
NEDD8-207ENST00000533242 BMP8BP34820 402 aa10.02□□□□□ -0.81
NEDD8-207ENST00000533242 GPR153Q6NV75 609 aa10.02□□□□□ -0.81
NEDD8-207ENST00000533242 SPRYD3Q8NCJ5 442 aa10.02□□□□□ -0.81
NEDD8-207ENST00000533242 PLXNB2O15031 1838 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 ANKLE1Q8NAG6 615 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 COA7Q96BR5 231 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 STAP2Q9UGK3 403 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 FBXO3Q9UK99 471 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 DENND2AQ9ULE3 1009 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 LRRFIP2Q9Y608 721 aaKnown RBP10.01□□□□□ -0.81
NEDD8-207ENST00000533242 GAKO14976 1311 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 CTNND1O60716 968 aaKnown RBP10.01□□□□□ -0.81
NEDD8-207ENST00000533242 ANKRD45Q5TZF3 282 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 ATG9AQ7Z3C6 839 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 NECAB2Q7Z6G3 386 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 SMCR8Q8TEV9 937 aaPredicted RBP10.01□□□□□ -0.81
NEDD8-207ENST00000533242 LRCH3Q96II8 777 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 C22orf23Q9BZE7 217 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.01□□□□□ -0.81
NEDD8-207ENST00000533242 USP44Q9H0E7 712 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 AGTPBP1Q9UPW5 1226 aa10.01□□□□□ -0.81
NEDD8-207ENST00000533242 CIAO1O76071 339 aa10□□□□□ -0.81
NEDD8-207ENST00000533242 MNX1P50219 401 aaPredicted RBP10□□□□□ -0.81
NEDD8-207ENST00000533242 ATP2B3Q16720 1220 aa10□□□□□ -0.81
NEDD8-207ENST00000533242 SH3BP5LQ7L8J4 393 aa10□□□□□ -0.81
NEDD8-207ENST00000533242 ZGPATQ8N5A5 531 aaKnown RBP10□□□□□ -0.81
NEDD8-207ENST00000533242 PAWRQ96IZ0 340 aaKnown RBP10□□□□□ -0.81
NEDD8-207ENST00000533242 GDF15Q99988 308 aa10□□□□□ -0.81
NEDD8-207ENST00000533242 UPF2Q9HAU5 1272 aaKnown RBP10□□□□□ -0.81
NEDD8-207ENST00000533242 PNMA3Q9UL41 463 aa10□□□□□ -0.81
NEDD8-207ENST00000533242 FAM110CQ1W6H9 321 aa10□□□□□ -0.81
NEDD8-207ENST00000533242 SLF2Q8IX21 1173 aa10□□□□□ -0.81
NEDD8-207ENST00000533242 GSE1Q14687 1217 aa9.99□□□□□ -0.81
NEDD8-207ENST00000533242 ZSCAN29Q8IWY8 852 aaPredicted RBP9.99□□□□□ -0.81
NEDD8-207ENST00000533242 ANKRD13CQ8N6S4 541 aa9.99□□□□□ -0.81
NEDD8-207ENST00000533242 DIS3LQ8TF46 1054 aaKnown RBP9.99□□□□□ -0.81
NEDD8-207ENST00000533242 CEP126Q9P2H0 1117 aa9.99□□□□□ -0.81
NEDD8-207ENST00000533242 PDS5AQ29RF7 1337 aaKnown RBP9.99□□□□□ -0.81
NEDD8-207ENST00000533242 DDTLA6NHG4 134 aaPredicted RBP9.99□□□□□ -0.81
NEDD8-207ENST00000533242 TBC1D12O60347 775 aa9.99□□□□□ -0.81
NEDD8-207ENST00000533242 HMGCRP04035 888 aa9.99□□□□□ -0.81
NEDD8-207ENST00000533242 GCLCP48506 637 aaPredicted RBP9.99□□□□□ -0.81
NEDD8-207ENST00000533242 BECN1Q14457 450 aa9.99□□□□□ -0.81
NEDD8-207ENST00000533242 C7orf61Q8IZ16 206 aa9.99□□□□□ -0.81
NEDD8-207ENST00000533242 PROCA1Q8NCQ7 364 aaPredicted RBP9.99□□□□□ -0.81
NEDD8-207ENST00000533242 IL27Q8NEV9 243 aa9.99□□□□□ -0.81
NEDD8-207ENST00000533242 FAM163AQ96GL9 167 aaPredicted RBP9.99□□□□□ -0.81
NEDD8-207ENST00000533242 TAOK2Q9UL54 1235 aa9.99□□□□□ -0.81
NEDD8-207ENST00000533242 MKI67P46013 3256 aaKnown RBP9.98□□□□□ -0.81
NEDD8-207ENST00000533242 TRIM75PA6NK02 468 aa9.98□□□□□ -0.81
NEDD8-207ENST00000533242 PHKA1P46020 1223 aa9.98□□□□□ -0.81
NEDD8-207ENST00000533242 COL2A1P02458 1487 aaPredicted RBP9.98□□□□□ -0.81
NEDD8-207ENST00000533242 PABPC4Q13310 644 aaKnown RBP eCLIP9.98□□□□□ -0.81
NEDD8-207ENST00000533242 TREML2Q5T2D2 321 aa9.98□□□□□ -0.81
NEDD8-207ENST00000533242 SPTY2D1Q68D10 685 aaPredicted RBP9.98□□□□□ -0.81
NEDD8-207ENST00000533242 DZIP1Q86YF9 867 aaKnown RBP9.98□□□□□ -0.81
NEDD8-207ENST00000533242 OSBPL5Q9H0X9 879 aaPredicted RBP9.98□□□□□ -0.81
NEDD8-207ENST00000533242 DDX4Q9NQI0 724 aaKnown RBP9.98□□□□□ -0.81
NEDD8-207ENST00000533242 RPTORQ8N122 1335 aa9.97□□□□□ -0.81
NEDD8-207ENST00000533242 LRIT3Q3SXY7 679 aa9.97□□□□□ -0.81
NEDD8-207ENST00000533242 API5Q9BZZ5 524 aaKnown RBP9.97□□□□□ -0.81
NEDD8-207ENST00000533242 NBPF3Q9H094 633 aa9.97□□□□□ -0.81
NEDD8-207ENST00000533242 C11orf49Q9H6J7 331 aa9.97□□□□□ -0.81
NEDD8-207ENST00000533242 HMX1Q9NP08 348 aaPredicted RBP9.97□□□□□ -0.81
NEDD8-207ENST00000533242 ZMYND8Q9ULU4 1186 aaPredicted RBP9.97□□□□□ -0.81
NEDD8-207ENST00000533242 STXBP5LQ9Y2K9 1186 aa9.97□□□□□ -0.81
NEDD8-207ENST00000533242 FRMPD3Q5JV73 1810 aa9.97□□□□□ -0.81
NEDD8-207ENST00000533242 MROH7-TTC4A0A0A0MT08 1334 aa9.97□□□□□ -0.81
NEDD8-207ENST00000533242 MAP4K4O95819 1239 aaPredicted RBP9.96□□□□□ -0.81
NEDD8-207ENST00000533242 GSPT1P15170 499 aaKnown RBP9.96□□□□□ -0.81
NEDD8-207ENST00000533242 IL15P40933 162 aaPredicted RBP9.96□□□□□ -0.81
NEDD8-207ENST00000533242 BTDP43251 543 aa9.96□□□□□ -0.81
NEDD8-207ENST00000533242 BMP2KLQ5H9B9 411 aa9.96□□□□□ -0.81
NEDD8-207ENST00000533242 OTUD7AQ8TE49 926 aaPredicted RBP9.96□□□□□ -0.81
NEDD8-207ENST00000533242 KIF2CQ99661 725 aa9.96□□□□□ -0.81
NEDD8-207ENST00000533242 MEIS3Q99687 375 aa9.96□□□□□ -0.81
NEDD8-207ENST00000533242 SIL1Q9H173 461 aa9.96□□□□□ -0.81
NEDD8-207ENST00000533242 GJD2Q9UKL4 321 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms