RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 TRIM55Q9BYV6 548 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 EHMT1Q9H9B1 1298 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 PCMTD2Q9NV79 361 aa4.45□□□□□ -1.7
CD44-234ENST00000531873 GRIN3BO60391 1043 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 LILRB5O75023 590 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 BPNT1O95861 308 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 CDC25BP30305 580 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 IRAK1P51617 712 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 CABP4P57796 275 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 PIP4K2BP78356 416 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 DDR2Q16832 855 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 SHISA2Q6UWI4 295 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 CACTIN-AS1Q8N1I8 211 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 IL22RA1Q8N6P7 574 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 MICAL1Q8TDZ2 1067 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 TNKS2Q9H2K2 1166 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 JPH1Q9HDC5 661 aaPredicted RBP4.44□□□□□ -1.7
CD44-234ENST00000531873 ACTR10Q9NZ32 417 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 PCDHB14Q9Y5E9 798 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 PRR36Q9H6K5 1346 aa4.44□□□□□ -1.7
CD44-234ENST00000531873 SBNO2Q9Y2G9 1366 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 ANKRD62A6NC57 917 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 MEIS3P2A8K0S8 358 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 LINC01387J3KSC0 135 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 GFRA2O00451 464 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 ENPP3O14638 875 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 ZNF862O60290 1169 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 IMPDH2P12268 514 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 CD97P48960 835 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 GSTM4Q03013 218 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 C19orf57Q0VDD7 668 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 INPP5AQ14642 412 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 WIPI1Q5MNZ9 446 aaPredicted RBP4.43□□□□□ -1.7
CD44-234ENST00000531873 FBXW10Q5XX13 1052 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 LRFN4Q6PJG9 635 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 RUFY4Q6ZNE9 571 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 OR6P1Q8NGX9 317 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 SLC7A3Q8WY07 619 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 PLPPR2Q96GM1 343 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 RNPC3Q96LT9 517 aaKnown RBP4.43□□□□□ -1.7
CD44-234ENST00000531873 CARD10Q9BWT7 1032 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 ZC3H12CQ9C0D7 883 aaKnown RBP4.43□□□□□ -1.7
CD44-234ENST00000531873 CCDC86Q9H6F5 360 aaKnown RBP4.43□□□□□ -1.7
CD44-234ENST00000531873 ANTXR1Q9H6X2 564 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 KANSL2Q9H9L4 492 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 PPME1Q9Y570 386 aa4.43□□□□□ -1.7
CD44-234ENST00000531873 FAM177BA6PVY3 158 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 B2RBV5 119 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 FSCN2O14926 492 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 DNAJA2O60884 412 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 HMGB1P09429 215 aaKnown RBP4.42□□□□□ -1.7
CD44-234ENST00000531873 TAL1P17542 331 aaPredicted RBP4.42□□□□□ -1.7
CD44-234ENST00000531873 CASP7P55210 303 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 POU4F3Q15319 338 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 LRP10Q7Z4F1 713 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 FMR1NBQ8N0W7 255 aaPredicted RBP4.42□□□□□ -1.7
CD44-234ENST00000531873 DDX54Q8TDD1 881 aaKnown RBP4.42□□□□□ -1.7
CD44-234ENST00000531873 KCNB2Q92953 911 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 WNT8BQ93098 351 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 WDR89Q96FK6 387 aaPredicted RBP4.42□□□□□ -1.7
CD44-234ENST00000531873 KRT82Q9NSB4 513 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 PCDHA4Q9UN74 947 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.42□□□□□ -1.7
CD44-234ENST00000531873 MAPK8IP1Q9UQF2 711 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 RNF114Q9Y508 228 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 PCDHGC5Q9Y5F6 944 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 CORINQ9Y5Q5 1042 aa4.42□□□□□ -1.7
CD44-234ENST00000531873 CCDC85CA6NKD9 419 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 UPK3BL1B0FP48 263 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 UPK3BL2E5RIL1 263 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 U2SURPO15042 1029 aaKnown RBP4.41□□□□□ -1.7
CD44-234ENST00000531873 ADAM11O75078 769 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 HTR3BO95264 441 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 CYP11A1P05108 521 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 MAOBP27338 520 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 PRR23CQ6ZRP0 262 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 C19orf47Q8N9M1 422 aaKnown RBP4.41□□□□□ -1.7
CD44-234ENST00000531873 GALNT11Q8NCW6 608 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 WFDC12Q8WWY7 111 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 KLHDC7BQ96G42 594 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 CRBNQ96SW2 442 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 CORO1BQ9BR76 489 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 CCDC113Q9H0I3 377 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 OSGEPQ9NPF4 335 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 ST7Q9NRC1 585 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 USP21Q9UK80 565 aa4.41□□□□□ -1.7
CD44-234ENST00000531873 R3HCC1Q9Y3T6 440 aaKnown RBP4.41□□□□□ -1.7
CD44-234ENST00000531873 A0A1W2PQH9 124 aa4.4□□□□□ -1.71
CD44-234ENST00000531873 GJB6O95452 261 aa4.4□□□□□ -1.71
CD44-234ENST00000531873 DLGAP3O95886 979 aa4.4□□□□□ -1.71
CD44-234ENST00000531873 ACRP10323 421 aa4.4□□□□□ -1.71
CD44-234ENST00000531873 HSD3B2P26439 372 aa4.4□□□□□ -1.71
CD44-234ENST00000531873 RASGRF1Q13972 1273 aa4.4□□□□□ -1.71
CD44-234ENST00000531873 SETDB1Q15047 1291 aa4.4□□□□□ -1.71
CD44-234ENST00000531873 KIF4BQ2VIQ3 1234 aa4.4□□□□□ -1.71
CD44-234ENST00000531873 LARP1BQ659C4 914 aaKnown RBP4.4□□□□□ -1.71
CD44-234ENST00000531873 MSL1Q68DK7 614 aa4.4□□□□□ -1.71
CD44-234ENST00000531873 OVOS1Q6IE37 1185 aa4.4□□□□□ -1.71
CD44-234ENST00000531873 MRM1Q6IN84 353 aaKnown RBP4.4□□□□□ -1.71
CD44-234ENST00000531873 CYFIP1Q7L576 1253 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms