RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 MINDY4BA8MYZ0 360 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 TARSP26639 723 aaKnown RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 NASPP49321 788 aaPredicted RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 LIG3P49916 1009 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 NRLP54845 237 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 PPP2R3AQ06190 1150 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 SNAP47Q5SQN1 464 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 ZNF746Q6NUN9 644 aaPredicted RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 ZNF775Q96BV0 537 aaPredicted RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 TCF12Q99081 682 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 BHLHE41Q9C0J9 482 aaPredicted RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 NUCKS1Q9H1E3 243 aaKnown RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 ATP13A2Q9NQ11 1180 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 ADAMTS1Q9UHI8 967 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 ZFYVE9O95405 1425 aa6.65□□□□□ -1.35
HMGB1P23-201ENST00000518743 ARHGAP31Q2M1Z3 1444 aa6.65□□□□□ -1.35
HMGB1P23-201ENST00000518743 EIF2AK4Q9P2K8 1649 aaKnown RBP6.65□□□□□ -1.35
HMGB1P23-201ENST00000518743 GCC2Q8IWJ2 1684 aa6.65□□□□□ -1.35
HMGB1P23-201ENST00000518743 NRAPQ86VF7 1730 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 XRN1Q8IZH2 1706 aaKnown RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 C11orf95C9JLR9 678 aaPredicted RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 MAN1A2O60476 641 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 CYP2E1P05181 493 aaPredicted RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 BMP1P13497 986 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 NFKB1P19838 968 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 TNP2Q05952 138 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 SPEM2Q0P670 501 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 APOBRQ0VD83 1088 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 KRT25Q7Z3Z0 450 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 TMEM102Q8N9M5 508 aaPredicted RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 PHC3Q8NDX5 983 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 DDX54Q8TDD1 881 aaKnown RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 RHOVQ96L33 236 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 EFR3BQ9Y2G0 817 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 LRPPRCP42704 1394 aaKnown RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 MBD5Q9P267 1494 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 RGPD3A6NKT7 1758 aaPredicted RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 FAM177BA6PVY3 158 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 K7ELQ4 463 aaPredicted RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 TSPY4P0CV99 314 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 TSPY10P0CW01 314 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 MAPTP10636 758 aaKnown RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 HSD3B2P26439 372 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 HNRNPUQ00839 825 aaKnown RBP eCLIP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 SFSWAPQ12872 951 aaKnown RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 SPATA31A5Q5VU36 1347 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 SCARA3Q6AZY7 606 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 TPTE2Q6XPS3 522 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 RIPOR1Q6ZS17 1223 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 DHX32Q7L7V1 743 aaKnown RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 RGPD4Q7Z3J3 1758 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 SPATA31A7Q8IWB4 1347 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 ARHGEF28Q8N1W1 1705 aaKnown RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 OR6P1Q8NGX9 317 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZKSCAN3Q9BRR0 538 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 PRDM10Q9NQV6 1147 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 LATS2Q9NRM7 1088 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 DZANK1Q9NVP4 752 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 ATXN7L1Q9ULK2 861 aaPredicted RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 DCDC2BA2VCK2 349 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 FOXN1O15353 648 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 GREM1O60565 184 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 IMPDH2P12268 514 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 SNRPBP14678 240 aaKnown RBP6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 RGS19P49795 217 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 GPLD1P80108 840 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 CAMK2GQ13555 558 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 BMS1Q14692 1282 aaKnown RBP6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 LRRC14Q15048 493 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 SLC15A2Q16348 729 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 TAF7LQ5H9L4 462 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 TTBK2Q6IQ55 1244 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 FOXR1Q6PIV2 292 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 AGMOQ6ZNB7 445 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 TRIM42Q8IWZ5 723 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 CEP120Q8N960 986 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 NKD1Q969G9 470 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 EAF1Q96JC9 268 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZFP42Q96MM3 310 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 NECAB3Q96P71 396 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZNF408Q9H9D4 720 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 TMEM39AQ9NV64 488 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 DNMT3LQ9UJW3 386 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 TULP4Q9NRJ4 1543 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 TNRC18O15417 2968 aaPredicted RBP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 KANK1Q14678 1352 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 A0A096LPE4 126 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 A0A1W2PPZ6 126 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 PDE2AO00408 941 aaPredicted RBP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 SMNDC1O75940 238 aaKnown RBP eCLIP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 GHRHP01286 108 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 FSTL1Q12841 308 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 SERINC3Q13530 473 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 CWF19L2Q2TBE0 894 aaKnown RBP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 PCNX4Q63HM2 1172 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 FBXL19Q6PCT2 694 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 SLITRK4Q8IW52 837 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 TRIM22Q8IYM9 498 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 GOLM1Q8NBJ4 401 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZCRB1Q8TBF4 217 aaKnown RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms