RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ELMO3Q96BJ8 720 aa5.86□□□□□ -1.47
NUP54-208ENST00000508604 CTNND2Q9UQB3 1225 aa5.86□□□□□ -1.47
NUP54-208ENST00000508604 DCDC2CA8MYV0 355 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 FAM155AB1AL88 458 aaPredicted RBP5.85□□□□□ -1.47
NUP54-208ENST00000508604 TRIM37O94972 964 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 TMEM67Q5HYA8 995 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 NXPE4Q6UWF7 544 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 CYFIP1Q7L576 1253 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 TXNDC2Q86VQ3 553 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 CCDC120Q96HB5 630 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 KIRREL1Q96J84 757 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 C1orf115Q9H7X2 142 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 MAPK8IP1Q9UQF2 711 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 ZNF503-AS2A6NEH8 195 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 GLI1P08151 1106 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 GSTT1P30711 240 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 PLCB3Q01970 1234 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 NKPD1Q17RQ9 610 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.85□□□□□ -1.47
NUP54-208ENST00000508604 TPTE2Q6XPS3 522 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 FAM214BQ7L5A3 538 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 C12orf40Q86WS4 652 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 ANKLE2Q86XL3 938 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 ZNF507Q8TCN5 953 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 NECAB3Q96P71 396 aaPredicted RBP5.85□□□□□ -1.47
NUP54-208ENST00000508604 KRTAP4-9Q9BYQ8 210 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 SRCIN1Q9C0H9 1055 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.85□□□□□ -1.47
NUP54-208ENST00000508604 BIN2Q9UBW5 565 aaPredicted RBP5.85□□□□□ -1.47
NUP54-208ENST00000508604 PCDHA4Q9UN74 947 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 PITPNM2Q9BZ72 1349 aa5.85□□□□□ -1.47
NUP54-208ENST00000508604 TSPAN15O95858 294 aa5.84□□□□□ -1.47
NUP54-208ENST00000508604 ZBTB37Q5TC79 503 aa5.84□□□□□ -1.47
NUP54-208ENST00000508604 SCARA3Q6AZY7 606 aa5.84□□□□□ -1.47
NUP54-208ENST00000508604 LLGL2Q6P1M3 1020 aa5.84□□□□□ -1.47
NUP54-208ENST00000508604 NPAS4Q8IUM7 802 aa5.84□□□□□ -1.47
NUP54-208ENST00000508604 LIN37Q96GY3 246 aaPredicted RBP5.84□□□□□ -1.47
NUP54-208ENST00000508604 TPX2Q9ULW0 747 aaKnown RBP5.84□□□□□ -1.47
NUP54-208ENST00000508604 PNMA6FA0A0J9YX94 578 aa5.83□□□□□ -1.48
NUP54-208ENST00000508604 LRIG2O94898 1065 aa5.83□□□□□ -1.48
NUP54-208ENST00000508604 SYDE1Q6ZW31 735 aaPredicted RBP5.83□□□□□ -1.48
NUP54-208ENST00000508604 TMC7Q7Z402 723 aa5.83□□□□□ -1.48
NUP54-208ENST00000508604 CARS2Q9HA77 564 aaKnown RBP5.83□□□□□ -1.48
NUP54-208ENST00000508604 DCTN4Q9UJW0 460 aa5.83□□□□□ -1.48
NUP54-208ENST00000508604 PPM1HQ9ULR3 514 aa5.83□□□□□ -1.48
NUP54-208ENST00000508604 NFIBO00712 420 aa5.82□□□□□ -1.48
NUP54-208ENST00000508604 SFRP5Q5T4F7 317 aa5.82□□□□□ -1.48
NUP54-208ENST00000508604 ARMCX6Q7L4S7 300 aa5.82□□□□□ -1.48
NUP54-208ENST00000508604 CACNA2D2Q9NY47 1150 aa5.82□□□□□ -1.48
NUP54-208ENST00000508604 EOMESO95936 686 aa5.82□□□□□ -1.48
NUP54-208ENST00000508604 BMP6P22004 513 aa5.82□□□□□ -1.48
NUP54-208ENST00000508604 CDKAL1Q5VV42 579 aa5.82□□□□□ -1.48
NUP54-208ENST00000508604 ZNF746Q6NUN9 644 aaPredicted RBP5.82□□□□□ -1.48
NUP54-208ENST00000508604 GRIN3AQ8TCU5 1115 aa5.82□□□□□ -1.48
NUP54-208ENST00000508604 CYP8B1Q9UNU6 501 aa5.82□□□□□ -1.48
NUP54-208ENST00000508604 CFPP27918 469 aa5.81□□□□□ -1.48
NUP54-208ENST00000508604 NTF4P34130 210 aa5.81□□□□□ -1.48
NUP54-208ENST00000508604 GDNFP39905 211 aa5.81□□□□□ -1.48
NUP54-208ENST00000508604 RING1Q06587 406 aa5.81□□□□□ -1.48
NUP54-208ENST00000508604 FYB2Q5VWT5 728 aa5.81□□□□□ -1.48
NUP54-208ENST00000508604 MPRIPQ6WCQ1 1025 aa5.81□□□□□ -1.48
NUP54-208ENST00000508604 LRRC56Q8IYG6 542 aaPredicted RBP5.81□□□□□ -1.48
NUP54-208ENST00000508604 MFSD4AQ8N468 514 aa5.81□□□□□ -1.48
NUP54-208ENST00000508604 FBXO15Q8NCQ5 510 aaPredicted RBP5.81□□□□□ -1.48
NUP54-208ENST00000508604 HSPA12BQ96MM6 686 aa5.81□□□□□ -1.48
NUP54-208ENST00000508604 PRAMEF27A3QJZ7 478 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 SOWAHDA6NJG2 315 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 ENC1O14682 589 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 GIPC1O14908 333 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 RAC2P15153 192 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 MAPK1P28482 360 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 ENOX2Q16206 610 aaKnown RBP5.8□□□□□ -1.48
NUP54-208ENST00000508604 PRR23BQ6ZRT6 265 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 HDXQ7Z353 690 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 SIAH1Q8IUQ4 282 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 MFSD2AQ8NA29 543 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 FBF1Q8TES7 1133 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 ATP13A1Q9HD20 1204 aa5.8□□□□□ -1.48
NUP54-208ENST00000508604 H3BS24 57 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 CYP7A1P22680 504 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 LCE4AQ5TA78 99 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 UBE3DQ7Z6J8 389 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 C3orf58Q8NDZ4 430 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 MIPEPQ99797 713 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.79□□□□□ -1.48
NUP54-208ENST00000508604 TMEM253P0C7T8 217 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 DSC3Q14574 896 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 C22orf34Q6ZV56 151 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 DIRC2Q96SL1 478 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 NSUN3Q9H649 340 aaKnown RBP5.79□□□□□ -1.48
NUP54-208ENST00000508604 SEMA3GQ9NS98 782 aa5.79□□□□□ -1.48
NUP54-208ENST00000508604 TREHO43280 583 aa5.78□□□□□ -1.48
NUP54-208ENST00000508604 FBXO24O75426 580 aa5.78□□□□□ -1.48
NUP54-208ENST00000508604 PAGE1O75459 146 aa5.78□□□□□ -1.48
NUP54-208ENST00000508604 SLITRK5O94991 958 aa5.78□□□□□ -1.48
NUP54-208ENST00000508604 ZNF865P0CJ78 1059 aaPredicted RBP5.78□□□□□ -1.48
NUP54-208ENST00000508604 ETF1P62495 437 aaKnown RBP5.78□□□□□ -1.48
NUP54-208ENST00000508604 FGD1P98174 961 aa5.78□□□□□ -1.48
NUP54-208ENST00000508604 THAP5Q7Z6K1 395 aa5.78□□□□□ -1.48
NUP54-208ENST00000508604 COX4I2Q96KJ9 171 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms