RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 MOGSQ13724 837 aa21.9■■□□□ 1.1
SQSTM1-209ENST00000504627 GADL1Q6ZQY3 521 aa21.9■■□□□ 1.1
SQSTM1-209ENST00000504627 TGFBRAP1Q8WUH2 860 aa21.9■■□□□ 1.1
SQSTM1-209ENST00000504627 PARK7Q99497 189 aaKnown RBP21.9■■□□□ 1.1
SQSTM1-209ENST00000504627 BCL11AQ9H165 835 aa21.9■■□□□ 1.1
SQSTM1-209ENST00000504627 DHX36Q9H2U1 1008 aaKnown RBP21.9■■□□□ 1.1
SQSTM1-209ENST00000504627 A0A0G2JLL6 359 aaPredicted RBP21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 TRIM75PA6NK02 468 aa21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 CYP7A1P22680 504 aa21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 C17orf99Q6UX52 265 aa21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 PRRT2Q7Z6L0 340 aaPredicted RBP21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 ADGRA1Q86SQ6 560 aa21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 MAPKAPK5Q8IW41 473 aa21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 CLASRPQ8N2M8 674 aaKnown RBP21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 RWDD1Q9H446 243 aaPredicted RBP21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 PI4KBQ9UBF8 816 aa21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 COL2A1P02458 1487 aaPredicted RBP21.89■■□□□ 1.09
SQSTM1-209ENST00000504627 KIF1BPQ96EK5 621 aa21.88■■□□□ 1.09
SQSTM1-209ENST00000504627 TRIM34Q9BYJ4 488 aa21.88■■□□□ 1.09
SQSTM1-209ENST00000504627 ARHGAP39Q9C0H5 1083 aa21.88■■□□□ 1.09
SQSTM1-209ENST00000504627 HERC5Q9UII4 1024 aaKnown RBP21.88■■□□□ 1.09
SQSTM1-209ENST00000504627 NDUFB9Q9Y6M9 179 aa21.88■■□□□ 1.09
SQSTM1-209ENST00000504627 GNRH1P01148 92 aa21.87■■□□□ 1.09
SQSTM1-209ENST00000504627 MAP3K12Q12852 859 aa21.87■■□□□ 1.09
SQSTM1-209ENST00000504627 SLC9C1Q4G0N8 1177 aa21.87■■□□□ 1.09
SQSTM1-209ENST00000504627 GPAT2Q6NUI2 795 aa21.87■■□□□ 1.09
SQSTM1-209ENST00000504627 NBPF11Q86T75 865 aa21.87■■□□□ 1.09
SQSTM1-209ENST00000504627 CCDC84Q86UT8 332 aaPredicted RBP21.87■■□□□ 1.09
SQSTM1-209ENST00000504627 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.87■■□□□ 1.09
SQSTM1-209ENST00000504627 PTCH2Q9Y6C5 1203 aa21.87■■□□□ 1.09
SQSTM1-209ENST00000504627 MAST2Q6P0Q8 1798 aa21.87■■□□□ 1.09
SQSTM1-209ENST00000504627 FLT1P17948 1338 aa21.86■■□□□ 1.09
SQSTM1-209ENST00000504627 IFIT2P09913 472 aaKnown RBP21.86■■□□□ 1.09
SQSTM1-209ENST00000504627 CYP2C8P10632 490 aa21.86■■□□□ 1.09
SQSTM1-209ENST00000504627 DYNLL1P63167 89 aaKnown RBP21.86■■□□□ 1.09
SQSTM1-209ENST00000504627 CRACR2BQ8N4Y2 399 aaPredicted RBP21.86■■□□□ 1.09
SQSTM1-209ENST00000504627 MAGEB6Q8N7X4 407 aa21.86■■□□□ 1.09
SQSTM1-209ENST00000504627 HTTP42858 3142 aa21.85■■□□□ 1.09
SQSTM1-209ENST00000504627 FMNL1O95466 1100 aaPredicted RBP21.85■■□□□ 1.09
SQSTM1-209ENST00000504627 CAP2P40123 477 aa21.85■■□□□ 1.09
SQSTM1-209ENST00000504627 PSMC4P43686 418 aa21.85■■□□□ 1.09
SQSTM1-209ENST00000504627 CERS3Q8IU89 383 aa21.85■■□□□ 1.09
SQSTM1-209ENST00000504627 MIGA1Q8NAN2 632 aa21.85■■□□□ 1.09
SQSTM1-209ENST00000504627 ARMC5Q96C12 935 aa21.85■■□□□ 1.09
SQSTM1-209ENST00000504627 ANTXR1Q9H6X2 564 aa21.85■■□□□ 1.09
SQSTM1-209ENST00000504627 DOCK1Q14185 1865 aa21.85■■□□□ 1.09
SQSTM1-209ENST00000504627 RAB11FIP3O75154 756 aa21.84■■□□□ 1.09
SQSTM1-209ENST00000504627 HLA-DOAP06340 250 aa21.84■■□□□ 1.09
SQSTM1-209ENST00000504627 HOXD10P28358 340 aa21.84■■□□□ 1.09
SQSTM1-209ENST00000504627 SIRT2Q8IXJ6 389 aa21.84■■□□□ 1.09
SQSTM1-209ENST00000504627 PALD1Q9ULE6 856 aa21.84■■□□□ 1.09
SQSTM1-209ENST00000504627 SLC45A1Q9Y2W3 748 aa21.84■■□□□ 1.09
SQSTM1-209ENST00000504627 ADGRA2Q96PE1 1338 aa21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 IGHDP01880 384 aa21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 USP5P45974 858 aa21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 PRMT2P55345 433 aa21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 SPP2Q13103 211 aa21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 TTF1Q15361 905 aaPredicted RBP21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 FOXP4Q8IVH2 680 aaPredicted RBP21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 ZNF280CQ8ND82 737 aa21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 SMCR8Q8TEV9 937 aaPredicted RBP21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 TMEM106CQ9BVX2 250 aa21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 TBC1D2Q9BYX2 928 aa21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 AS3MTQ9HBK9 375 aa21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 SAP30BPQ9UHR5 308 aaKnown RBP21.83■■□□□ 1.09
SQSTM1-209ENST00000504627 MYO5AQ9Y4I1 1855 aaKnown RBP21.82■■□□□ 1.08
SQSTM1-209ENST00000504627 USP17L5A8MUK1 530 aa21.82■■□□□ 1.08
SQSTM1-209ENST00000504627 TMED8Q6PL24 325 aaPredicted RBP21.82■■□□□ 1.08
SQSTM1-209ENST00000504627 AGTPBP1Q9UPW5 1226 aa21.82■■□□□ 1.08
SQSTM1-209ENST00000504627 TNRC18O15417 2968 aaPredicted RBP21.82■■□□□ 1.08
SQSTM1-209ENST00000504627 POTEFA5A3E0 1075 aa21.81■■□□□ 1.08
SQSTM1-209ENST00000504627 RRP1BQ14684 758 aaKnown RBP21.81■■□□□ 1.08
SQSTM1-209ENST00000504627 SLC4A8Q2Y0W8 1093 aa21.81■■□□□ 1.08
SQSTM1-209ENST00000504627 ZNF333Q96JL9 665 aa21.81■■□□□ 1.08
SQSTM1-209ENST00000504627 TRIM47Q96LD4 638 aa21.81■■□□□ 1.08
SQSTM1-209ENST00000504627 DNAJC2Q99543 621 aaKnown RBP21.81■■□□□ 1.08
SQSTM1-209ENST00000504627 PNMA3Q9UL41 463 aa21.81■■□□□ 1.08
SQSTM1-209ENST00000504627 CENPFP49454 3210 aa21.81■■□□□ 1.08
SQSTM1-209ENST00000504627 MYCP01106 439 aaPredicted RBP21.8■■□□□ 1.08
SQSTM1-209ENST00000504627 ASNSP08243 561 aa21.8■■□□□ 1.08
SQSTM1-209ENST00000504627 BCRP11274 1271 aa21.8■■□□□ 1.08
SQSTM1-209ENST00000504627 OSBPP22059 807 aa21.8■■□□□ 1.08
SQSTM1-209ENST00000504627 FCGRTP55899 365 aa21.8■■□□□ 1.08
SQSTM1-209ENST00000504627 PROCA1Q8NCQ7 364 aaPredicted RBP21.8■■□□□ 1.08
SQSTM1-209ENST00000504627 RAET1EQ8TD07 263 aa21.8■■□□□ 1.08
SQSTM1-209ENST00000504627 SH3TC2Q8TF17 1288 aa21.8■■□□□ 1.08
SQSTM1-209ENST00000504627 SRRDQ9UH36 339 aa21.8■■□□□ 1.08
SQSTM1-209ENST00000504627 GOLIM4O00461 696 aa21.79■■□□□ 1.08
SQSTM1-209ENST00000504627 CTGFP29279 349 aa21.79■■□□□ 1.08
SQSTM1-209ENST00000504627 HMGCS2P54868 508 aa21.79■■□□□ 1.08
SQSTM1-209ENST00000504627 PABPC4Q13310 644 aaKnown RBP eCLIP21.79■■□□□ 1.08
SQSTM1-209ENST00000504627 TREML2Q5T2D2 321 aa21.79■■□□□ 1.08
SQSTM1-209ENST00000504627 SLC9C2Q5TAH2 1124 aa21.79■■□□□ 1.08
SQSTM1-209ENST00000504627 SMC5Q8IY18 1101 aa21.79■■□□□ 1.08
SQSTM1-209ENST00000504627 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.79■■□□□ 1.08
SQSTM1-209ENST00000504627 GCC1Q96CN9 775 aa21.79■■□□□ 1.08
SQSTM1-209ENST00000504627 PDE4DIPQ5VU43 2346 aa21.79■■□□□ 1.08
SQSTM1-209ENST00000504627 ZSWIM8A7E2V4 1837 aa21.78■■□□□ 1.08
SQSTM1-209ENST00000504627 GDF11O95390 407 aa21.78■■□□□ 1.08
SQSTM1-209ENST00000504627 METTL16Q86W50 562 aaKnown RBP21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms