RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	PPIL2	Q13356	520 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	MCMDC2	Q4G0Z9	681 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	NBPF12	Q5TAG4	269 aa	Predicted RBP	6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	C12orf60	Q5U649	245 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	SH3BP5L	Q7L8J4	393 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	SCYL3	Q8IZE3	742 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	OTUD7A	Q8TE49	926 aa	Predicted RBP	6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	RUFY2	Q8WXA3	655 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	OSBP2	Q969R2	916 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	MTA3	Q9BTC8	594 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	FSD1	Q9BTV5	496 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	WDR18	Q9BV38	432 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	DSCC1	Q9BVC3	393 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	TMEM39B	Q9GZU3	492 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	PUS7L	Q9H0K6	701 aa	Known RBP	6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	DDX4	Q9NQI0	724 aa	Known RBP	6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	PCDHAC2	Q9Y5I4	1007 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	CSAD	Q9Y600	493 aa		6.1	□□□□□ -1.43
HDAC6-223	ENST00000480525	CASP8AP2	Q9UKL3	1982 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	CCDC171	Q6TFL3	1326 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	WDR33	Q9C0J8	1336 aa	Known RBP	6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	DDTL	A6NHG4	134 aa	Predicted RBP	6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	GSG1L2	A8MUP6	293 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	TCP10L2	B9ZVM9	353 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	MBD4	O95243	580 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	SDS	P20132	328 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	CAP2	P40123	477 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	NOV	P48745	357 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	SH3D19	Q5HYK7	790 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	SPRYD7	Q5W111	196 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	C16orf86	Q6ZW13	317 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	RASAL3	Q86YV0	1011 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	LCORL	Q8N3X6	602 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	TGFBRAP1	Q8WUH2	860 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	CAPNS2	Q96L46	248 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525	C12orf42	Q96LP6	360 aa		6.09	□□□□□ -1.43
HDAC6-223	ENST00000480525		A0A0G2JMZ2	1700 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	RLF	Q13129	1914 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	C19orf81	C9J6K1	198 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	ORC4	O43929	436 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	SLC3A2	P08195	630 aa	Known RBP	6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	GSPT1	P15170	499 aa	Known RBP	6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	USP5	P45974	858 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	GTF2A2	P52657	109 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	VGLL4	Q14135	290 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	OTUD7B	Q6GQQ9	843 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	B4GALNT3	Q6L9W6	998 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	TMEM179	Q6ZVK1	233 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	IFNL3	Q8IZI9	196 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	PROCA1	Q8NCQ7	364 aa	Predicted RBP	6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	GTF3C2	Q8WUA4	911 aa	Predicted RBP	6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	EDC3	Q96F86	508 aa	Known RBP	6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	WRNIP1	Q96S55	665 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	DNAJC18	Q9H819	358 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	AS3MT	Q9HBK9	375 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	WBP1L	Q9NX94	342 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	CTNNA3	Q9UI47	895 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	ABT1	Q9ULW3	272 aa	Known RBP	6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	ANGEL1	Q9UNK9	670 aa	Known RBP	6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	SNCAIP	Q9Y6H5	919 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	NDUFB9	Q9Y6M9	179 aa		6.08	□□□□□ -1.44
HDAC6-223	ENST00000480525	MYPN	Q86TC9	1320 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525		A0A0G2JLL6	359 aa	Predicted RBP	6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	FOXP2	O15409	715 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	SGSM2	O43147	1006 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	HSPD1	P10809	573 aa	Known RBP	6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	CETP	P11597	493 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	PTPRA	P18433	802 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	CHML	P26374	656 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	SHMT1	P34896	483 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	VEGFB	P49765	207 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	ZNF157	P51786	506 aa	Predicted RBP	6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	CACNB3	P54284	484 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	USP14	P54578	494 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	PDE4B	Q07343	736 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	SNAPC2	Q13487	334 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	TSGA10IP	Q3SY00	556 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	CCDC178	Q5BJE1	867 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	RCSD1	Q6JBY9	416 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	CTR9	Q6PD62	1173 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	CASC1	Q6TDU7	716 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	LBX2	Q6XYB7	198 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	FASTKD5	Q7L8L6	764 aa	Known RBP	6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	PRRT2	Q7Z6L0	340 aa	Predicted RBP	6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	ANKRD23	Q86SG2	305 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	MIGA1	Q8NAN2	632 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	LPAR1	Q92633	364 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	MKL1	Q969V6	931 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	SLC10A4	Q96EP9	437 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	WNK4	Q96J92	1243 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	MS4A4A	Q96JQ5	239 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	MAF1	Q9H063	256 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	KIAA1683	Q9H0B3	1180 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	RNF41	Q9H4P4	317 aa	Predicted RBP	6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	SH2D4A	Q9H788	454 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	ARMT1	Q9H993	441 aa		6.07	□□□□□ -1.44
HDAC6-223	ENST00000480525	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	6.07	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms