RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 SPRYD7Q5W111 196 aa17.44■□□□□ 0.38
SQSTM1-205ENST00000464493 TTC6Q86TZ1 520 aa17.44■□□□□ 0.38
SQSTM1-205ENST00000464493 METTL16Q86W50 562 aaKnown RBP17.44■□□□□ 0.38
SQSTM1-205ENST00000464493 ZIC5Q96T25 663 aa17.44■□□□□ 0.38
SQSTM1-205ENST00000464493 SEC62Q99442 399 aaKnown RBP17.44■□□□□ 0.38
SQSTM1-205ENST00000464493 MCM9Q9NXL9 1143 aa17.44■□□□□ 0.38
SQSTM1-205ENST00000464493 FAM196BA6NMK8 535 aa17.43■□□□□ 0.38
SQSTM1-205ENST00000464493 GPAA1O43292 621 aa17.43■□□□□ 0.38
SQSTM1-205ENST00000464493 MAP2K1Q02750 393 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-205ENST00000464493 MKRN3Q13064 507 aaKnown RBP17.43■□□□□ 0.38
SQSTM1-205ENST00000464493 TTC22Q5TAA0 569 aa17.43■□□□□ 0.38
SQSTM1-205ENST00000464493 CRACR2BQ8N4Y2 399 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-205ENST00000464493 DDRGK1Q96HY6 314 aa17.43■□□□□ 0.38
SQSTM1-205ENST00000464493 WNK4Q96J92 1243 aa17.43■□□□□ 0.38
SQSTM1-205ENST00000464493 TRIM34Q9BYJ4 488 aa17.43■□□□□ 0.38
SQSTM1-205ENST00000464493 SNCAIPQ9Y6H5 919 aa17.43■□□□□ 0.38
SQSTM1-205ENST00000464493 CTNND1O60716 968 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-205ENST00000464493 ZBTB48P10074 688 aaPredicted RBP17.42■□□□□ 0.38
SQSTM1-205ENST00000464493 GNAT2P19087 354 aa17.42■□□□□ 0.38
SQSTM1-205ENST00000464493 PLCD1P51178 756 aa17.42■□□□□ 0.38
SQSTM1-205ENST00000464493 ERO1BQ86YB8 467 aa17.42■□□□□ 0.38
SQSTM1-205ENST00000464493 OPTNQ96CV9 577 aa17.42■□□□□ 0.38
SQSTM1-205ENST00000464493 HELLSQ9NRZ9 838 aa17.42■□□□□ 0.38
SQSTM1-205ENST00000464493 PPP4R2Q9NY27 417 aa17.42■□□□□ 0.38
SQSTM1-205ENST00000464493 NAV1Q8NEY1 1877 aa17.41■□□□□ 0.38
SQSTM1-205ENST00000464493 THSD7BQ9C0I4 1608 aa17.41■□□□□ 0.38
SQSTM1-205ENST00000464493 GSPT1P15170 499 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-205ENST00000464493 SDSP20132 328 aa17.41■□□□□ 0.38
SQSTM1-205ENST00000464493 NOL9Q5SY16 702 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-205ENST00000464493 REM2Q8IYK8 340 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-205ENST00000464493 CNKSR2Q8WXI2 1034 aa17.41■□□□□ 0.38
SQSTM1-205ENST00000464493 EHD4Q9H223 541 aa17.41■□□□□ 0.38
SQSTM1-205ENST00000464493 SERPINB13Q9UIV8 391 aa17.41■□□□□ 0.38
SQSTM1-205ENST00000464493 SIPA1L1O43166 1804 aa17.41■□□□□ 0.38
SQSTM1-205ENST00000464493 SPDYE5A6NIY4 337 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 GSG1L2A8MUP6 293 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 PATL2C9JE40 543 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 APPP05067 770 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 GJA5P36382 358 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 MCMDC2Q4G0Z9 681 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 GIMAP6Q6P9H5 292 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 AMOTL1Q8IY63 956 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 SCYL3Q8IZE3 742 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 OTUD5Q96G74 571 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 FAM227BQ96M60 508 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 DNAJC18Q9H819 358 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 PICK1Q9NRD5 415 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 WBP1LQ9NX94 342 aa17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 BAZ2AQ9UIF9 1905 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-205ENST00000464493 DDX60LQ5H9U9 1706 aaKnown RBP17.39■□□□□ 0.37
SQSTM1-205ENST00000464493 USP17L12C9JPN9 530 aa17.39■□□□□ 0.37
SQSTM1-205ENST00000464493 USP17L21D6R901 530 aa17.39■□□□□ 0.37
SQSTM1-205ENST00000464493 CAP2P40123 477 aa17.39■□□□□ 0.37
SQSTM1-205ENST00000464493 PPATQ06203 517 aa17.39■□□□□ 0.37
SQSTM1-205ENST00000464493 NMIQ13287 307 aaPredicted RBP17.39■□□□□ 0.37
SQSTM1-205ENST00000464493 CCDC129Q6ZRS4 1044 aa17.39■□□□□ 0.37
SQSTM1-205ENST00000464493 BEGAINQ9BUH8 593 aa17.39■□□□□ 0.37
SQSTM1-205ENST00000464493 A0A0D9SFI3 127 aa17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 MANSC4A6NHS7 340 aaPredicted RBP17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 HIP1O00291 1037 aa17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 CYP2D6P10635 497 aa17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 TM4SF4P48230 202 aa17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 INHBEP58166 350 aa17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 SREBF2Q12772 1141 aa17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 PPIL2Q13356 520 aa17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 RRP1BQ14684 758 aaKnown RBP17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 C12orf60Q5U649 245 aa17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 CTR9Q6PD62 1173 aa17.38■□□□□ 0.37
SQSTM1-205ENST00000464493 IRF6O14896 467 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 HSPA1AP0DMV8 641 aaKnown RBP17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 HSPA1BP0DMV9 641 aaKnown RBP17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 PTPRAP18433 802 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 EVX2Q03828 476 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 GABPAQ06546 454 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 SBK1Q52WX2 424 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 TATDN1Q6P1N9 297 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 SKAP1Q86WV1 359 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 IFNL3Q8IZI9 196 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 NACAP1Q9BZK3 213 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 DIAPH3Q9NSV4 1193 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 ARPP21Q9UBL0 812 aaPredicted RBP17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 ZHX2Q9Y6X8 837 aa17.37■□□□□ 0.37
SQSTM1-205ENST00000464493 CYP2D7A0A087X1C5 515 aa17.36■□□□□ 0.37
SQSTM1-205ENST00000464493 TDO2P48775 406 aa17.36■□□□□ 0.37
SQSTM1-205ENST00000464493 GTF2A2P52657 109 aa17.36■□□□□ 0.37
SQSTM1-205ENST00000464493 CWC27Q6UX04 472 aaKnown RBP17.36■□□□□ 0.37
SQSTM1-205ENST00000464493 MS4A4AQ96JQ5 239 aa17.36■□□□□ 0.37
SQSTM1-205ENST00000464493 EPB41L4AQ9HCS5 686 aaPredicted RBP17.36■□□□□ 0.37
SQSTM1-205ENST00000464493 TAOK2Q9UL54 1235 aa17.36■□□□□ 0.37
SQSTM1-205ENST00000464493 DOCK1Q14185 1865 aa17.35■□□□□ 0.37
SQSTM1-205ENST00000464493 MINDY4BA8MYZ0 360 aa17.35■□□□□ 0.37
SQSTM1-205ENST00000464493 SHMT1P34896 483 aa17.35■□□□□ 0.37
SQSTM1-205ENST00000464493 CERKLQ49MI3 558 aaPredicted RBP17.35■□□□□ 0.37
SQSTM1-205ENST00000464493 DYNLL2Q96FJ2 89 aa17.35■□□□□ 0.37
SQSTM1-205ENST00000464493 GINM1Q9NU53 330 aa17.35■□□□□ 0.37
SQSTM1-205ENST00000464493 SWAP70Q9UH65 585 aa17.35■□□□□ 0.37
SQSTM1-205ENST00000464493 TESPA1A2RU30 521 aaPredicted RBP17.34■□□□□ 0.37
SQSTM1-205ENST00000464493 SMIM22K7EJ46 135 aa17.34■□□□□ 0.37
SQSTM1-205ENST00000464493 CA12O43570 354 aa17.34■□□□□ 0.37
SQSTM1-205ENST00000464493 GDF11O95390 407 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms