RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 PSEN2P49810 448 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 PRSS12P56730 875 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 EXOSC10Q01780 885 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 JAKMIP3Q5VZ66 844 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 RALYLQ86SE5 291 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 MICU3Q86XE3 530 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 VSTM4Q8IW00 320 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 NFE2L3Q9Y4A8 694 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 ADGRL3Q9HAR2 1447 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 ARHGAP6O43182 974 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 TPM1P09493 284 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 AKAP4Q5JQC9 854 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 AXDND1Q5T1B0 1012 aaPredicted RBP11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 SYMPKQ92797 1274 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 HAUS7Q99871 368 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 MRPL44Q9H9J2 332 aaKnown RBP11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 GOPCQ9HD26 462 aa11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 DDX21Q9NR30 783 aaKnown RBP eCLIP11.31□□□□□ -0.6
PTCHD4-202ENST00000398738 PXDNLA1KZ92 1463 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 CHMP4BP1P59074 171 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 ZNF569Q5MCW4 686 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 FOXP4Q8IVH2 680 aaPredicted RBP11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 MPHOSPH8Q99549 860 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 INTS13Q9NVM9 706 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 M0R2C6 588 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 SHC4Q6S5L8 630 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 ANKRD13DQ6ZTN6 518 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 EPS8L1Q8TE68 723 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 ALG1Q9BT22 464 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 TSPYL1Q9H0U9 437 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 SAMSN1Q9NSI8 373 aaKnown RBP11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 HOXB7P09629 217 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 CMA1P23946 247 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 KCND1Q9NSA2 647 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 MRFAP1Q9Y605 127 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 NEDD4P46934 1319 aa11.3□□□□□ -0.6
PTCHD4-202ENST00000398738 MAST3O60307 1309 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 YEATS4O95619 227 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 FAM193AP78312 1265 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 ATL3Q6DD88 541 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 VPS37DQ86XT2 251 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 OSBP2Q969R2 916 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 KIF23Q02241 960 aaPredicted RBP11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 PSME1Q06323 249 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 FMR1Q06787 632 aaKnown RBP eCLIP11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 CCDC102BQ68D86 513 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 PI16Q6UXB8 463 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 RGS22Q8NE09 1264 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 ZNF274Q96GC6 653 aaPredicted RBP11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 ABCB6Q9NP58 842 aa11.29□□□□□ -0.6
PTCHD4-202ENST00000398738 ACTN2P35609 894 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 TXLNAP40222 546 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 LRRC24Q50LG9 513 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 NFXL1Q6ZNB6 911 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 SIRT1Q96EB6 747 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 PNKPQ96T60 521 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 TEX33O43247 280 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 CASP1P29466 404 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 IRX3P78415 501 aaPredicted RBP11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 HSP90B2PQ58FF3 399 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 METTL16Q86W50 562 aaKnown RBP11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 GOLGA5Q8TBA6 731 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 DRC1Q96MC2 740 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 INCENPQ9NQS7 918 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 KCNH3Q9ULD8 1083 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 EID1Q9Y6B2 187 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 IKBKBO14920 756 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 DHX16O60231 1041 aaKnown RBP11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 FGAP02671 866 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 BMP6P22004 513 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 ABL2P42684 1182 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 GTF2A1P52655 376 aaPredicted RBP11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 AKAP17AQ02040 695 aaKnown RBP11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 GRIN1Q05586 938 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 IMMTQ16891 758 aaKnown RBP11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 SRLQ86TD4 932 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 TC2NQ8N9U0 490 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 TTC13Q8NBP0 860 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 IP6K1Q92551 441 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 RABGGTAQ92696 567 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 CDC5LQ99459 802 aaKnown RBP11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 BPIFA3Q9BQP9 254 aa11.28□□□□□ -0.6
PTCHD4-202ENST00000398738 CEMIPQ8WUJ3 1361 aa11.27□□□□□ -0.6
PTCHD4-202ENST00000398738 POLR2DO15514 142 aaKnown RBP11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 ABL1P00519 1130 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 AFMP43652 599 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 SLC39A14Q15043 492 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 SPECC1LQ69YQ0 1117 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 KRT40Q6A162 431 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 TMEM139Q8IV31 216 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 CMTR1Q8N1G2 835 aaKnown RBP11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 COPRSQ9NQ92 184 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 SALL1Q9NSC2 1324 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 TUBB4AP04350 444 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 STAMQ92783 540 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 PUS3Q9BZE2 481 aaKnown RBP11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 SENP2Q9HC62 589 aa11.27□□□□□ -0.61
PTCHD4-202ENST00000398738 PES1O00541 588 aaKnown RBP11.26□□□□□ -0.61
PTCHD4-202ENST00000398738 RNF113AO15541 343 aaKnown RBP11.26□□□□□ -0.61
PTCHD4-202ENST00000398738 KIF5CO60282 957 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms