RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ST3GAL1Q11201 340 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 NIM1KQ8IY84 436 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 KLHL34Q8N239 644 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 IGDCC4Q8TDY8 1250 aa21.29■■□□□ 1
CCDC88C-203ENST00000389856 RANBP6O60518 1105 aaKnown RBP21.28■■□□□ 1
CCDC88C-203ENST00000389856 RHBDL3P58872 404 aa21.28■■□□□ 1
CCDC88C-203ENST00000389856 LARP1BQ659C4 914 aaKnown RBP21.28■■□□□ 1
CCDC88C-203ENST00000389856 MAPKAPK5Q8IW41 473 aa21.28■■□□□ 1
CCDC88C-203ENST00000389856 ZDHHC15Q96MV8 337 aa21.28■■□□□ 1
CCDC88C-203ENST00000389856 SERPINA10Q9UK55 444 aa21.28■■□□□ 1
CCDC88C-203ENST00000389856 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.28■■□□□ 1
CCDC88C-203ENST00000389856 SLC12A7Q9Y666 1083 aa21.28■■□□□ 1
CCDC88C-203ENST00000389856 PSDA5PKW4 1024 aaPredicted RBP21.27■■□□□ 1
CCDC88C-203ENST00000389856 ZBTB43O43298 467 aa21.27■■□□□ 1
CCDC88C-203ENST00000389856 PRPF40AO75400 957 aaKnown RBP21.27■■□□□ 1
CCDC88C-203ENST00000389856 SYT1P21579 422 aa21.27■■□□□ 1
CCDC88C-203ENST00000389856 CRKP46108 304 aa21.27■■□□□ 1
CCDC88C-203ENST00000389856 TAOK3Q9H2K8 898 aa21.27■■□□□ 1
CCDC88C-203ENST00000389856 LY9Q9HBG7 655 aa21.27■■□□□ 1
CCDC88C-203ENST00000389856 FLT1P17948 1338 aa21.27■■□□□ 1
CCDC88C-203ENST00000389856 MYH1P12882 1939 aa21.27■□□□□ 0.99
CCDC88C-203ENST00000389856 SCN9AQ15858 1988 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 USP17L8P0C7I0 530 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 IARSP41252 1262 aaKnown RBP21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 METAP2P50579 478 aaKnown RBP eCLIP21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 PPP2R5BQ15173 497 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 TTC6Q86TZ1 520 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 SMARCC2Q8TAQ2 1214 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 MKNK2Q9HBH9 465 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 TAOK2Q9UL54 1235 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 ZNF646O15015 1829 aaPredicted RBP21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 DDX60LQ5H9U9 1706 aaKnown RBP21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 CYP2D7A0A087X1C5 515 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 CCDC196A0A1B0GTZ2 297 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 ZSCAN22P10073 491 aaPredicted RBP21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 CCT2P78371 535 aaKnown RBP21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 KIAA0825Q8IV33 1275 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 ZSCAN10Q96SZ4 725 aaPredicted RBP21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 USP40Q9NVE5 1235 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 HDAC9Q9UKV0 1011 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 ZNRF3Q9ULT6 936 aa21.26■□□□□ 0.99
CCDC88C-203ENST00000389856 FER1L6Q2WGJ9 1857 aa21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 SCNN1DP51172 638 aa21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 APOA5Q6Q788 366 aa21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 STK11IPQ8N1F8 1099 aa21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 TMEM87AQ8NBN3 555 aa21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 NSUN7Q8NE18 718 aaKnown RBP21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 JDP2Q8WYK2 163 aa21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 SYAP1Q96A49 352 aaPredicted RBP21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 SPON1Q9HCB6 807 aa21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 INCENPQ9NQS7 918 aa21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 ZNF277Q9NRM2 450 aaPredicted RBP21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 ECM29Q5VYK3 1845 aa21.25■□□□□ 0.99
CCDC88C-203ENST00000389856 PTPDC1A2A3K4 754 aa21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 TSPY2A6NKD2 308 aa21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 NCLP19338 710 aaKnown RBP21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 PTGER2P43116 358 aa21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 MMP14P50281 582 aa21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 RBM5P52756 815 aaKnown RBP eCLIP21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 RSBN1LQ6PCB5 846 aaPredicted RBP21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 MXD3Q9BW11 206 aa21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 GPHNQ9NQX3 736 aaPredicted RBP21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 TNKSO95271 1327 aa21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 NID2Q14112 1375 aa21.24■□□□□ 0.99
CCDC88C-203ENST00000389856 GOLGA8AA7E2F4 631 aa21.23■□□□□ 0.99
CCDC88C-203ENST00000389856 CALM1P0DP23 149 aa21.23■□□□□ 0.99
CCDC88C-203ENST00000389856 CALM2P0DP24 149 aa21.23■□□□□ 0.99
CCDC88C-203ENST00000389856 CALM3P0DP25 149 aa21.23■□□□□ 0.99
CCDC88C-203ENST00000389856 CYP2D6P10635 497 aa21.23■□□□□ 0.99
CCDC88C-203ENST00000389856 ZSCAN23Q3MJ62 389 aa21.23■□□□□ 0.99
CCDC88C-203ENST00000389856 GAS2L3Q86XJ1 694 aa21.23■□□□□ 0.99
CCDC88C-203ENST00000389856 ZNF444Q8N0Y2 327 aaPredicted RBP21.23■□□□□ 0.99
CCDC88C-203ENST00000389856 RGS22Q8NE09 1264 aa21.23■□□□□ 0.99
CCDC88C-203ENST00000389856 TACC3Q9Y6A5 838 aa21.23■□□□□ 0.99
CCDC88C-203ENST00000389856 H3BQV1 296 aa21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 NPM3O75607 178 aaKnown RBP21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 CSPP1Q1MSJ5 1256 aa21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 IFIT1BQ5T764 474 aaKnown RBP21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 IFFO2Q5TF58 517 aa21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 CAVIN1Q6NZI2 390 aaKnown RBP21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 ANP32BQ92688 251 aaKnown RBP21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 KCNQ5Q9NR82 932 aa21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 SAP30BPQ9UHR5 308 aaKnown RBP21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 HPS5Q9UPZ3 1129 aa21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 LTBP3Q9NS15 1303 aa21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 VPS37CA5D8V6 355 aaPredicted RBP21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 HLA-DOAP06340 250 aa21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 APOBEC3HQ6NTF7 200 aaKnown RBP21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 CATIPQ7Z7H3 387 aa21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 OGFOD1Q8N543 542 aa21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 BCS1LQ9Y276 419 aa21.22■□□□□ 0.99
CCDC88C-203ENST00000389856 ARFGEF1Q9Y6D6 1849 aa21.21■□□□□ 0.99
CCDC88C-203ENST00000389856 YDJCA8MPS7 323 aa21.21■□□□□ 0.99
CCDC88C-203ENST00000389856 PRDM1O75626 825 aa21.21■□□□□ 0.99
CCDC88C-203ENST00000389856 F13A1P00488 732 aa21.21■□□□□ 0.99
CCDC88C-203ENST00000389856 VIL1P09327 827 aaKnown RBP21.21■□□□□ 0.99
CCDC88C-203ENST00000389856 CDC42EP5Q6NZY7 148 aa21.21■□□□□ 0.99
CCDC88C-203ENST00000389856 C16orf86Q6ZW13 317 aa21.21■□□□□ 0.99
CCDC88C-203ENST00000389856 MICU3Q86XE3 530 aa21.21■□□□□ 0.99
CCDC88C-203ENST00000389856 AGBL3Q8NEM8 1001 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms