RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 FCGRTP55899 365 aa17.76■□□□□ 0.43
PRPF40A-201ENST00000354363 OS9Q13438 667 aaPredicted RBP17.76■□□□□ 0.43
PRPF40A-201ENST00000354363 SH3RF3Q8TEJ3 882 aaPredicted RBP17.76■□□□□ 0.43
PRPF40A-201ENST00000354363 SURF6O75683 361 aaKnown RBP17.76■□□□□ 0.43
PRPF40A-201ENST00000354363 PRKCZQ05513 592 aa17.76■□□□□ 0.43
PRPF40A-201ENST00000354363 CCDC158Q5M9N0 1113 aa17.76■□□□□ 0.43
PRPF40A-201ENST00000354363 FTSJ3Q8IY81 847 aaKnown RBP17.76■□□□□ 0.43
PRPF40A-201ENST00000354363 MYH1P12882 1939 aa17.75■□□□□ 0.43
PRPF40A-201ENST00000354363 RLBP1P12271 317 aa17.75■□□□□ 0.43
PRPF40A-201ENST00000354363 NAA16Q6N069 864 aaPredicted RBP17.75■□□□□ 0.43
PRPF40A-201ENST00000354363 ITPRIPQ8IWB1 547 aa17.75■□□□□ 0.43
PRPF40A-201ENST00000354363 MIER1Q8N108 512 aa17.75■□□□□ 0.43
PRPF40A-201ENST00000354363 NOL10Q9BSC4 688 aaKnown RBP17.75■□□□□ 0.43
PRPF40A-201ENST00000354363 AGTPBP1Q9UPW5 1226 aa17.75■□□□□ 0.43
PRPF40A-201ENST00000354363 NOP58Q9Y2X3 529 aaKnown RBP17.75■□□□□ 0.43
PRPF40A-201ENST00000354363 ZBTB7BO15156 539 aaPredicted RBP17.74■□□□□ 0.43
PRPF40A-201ENST00000354363 CYP2E1P05181 493 aaPredicted RBP17.74■□□□□ 0.43
PRPF40A-201ENST00000354363 RRP1BQ14684 758 aaKnown RBP17.74■□□□□ 0.43
PRPF40A-201ENST00000354363 SHISA4Q96DD7 197 aa17.74■□□□□ 0.43
PRPF40A-201ENST00000354363 AATFQ9NY61 560 aaKnown RBP eCLIP17.74■□□□□ 0.43
PRPF40A-201ENST00000354363 GABRQQ9UN88 632 aa17.74■□□□□ 0.43
PRPF40A-201ENST00000354363 BAG3O95817 575 aa17.73■□□□□ 0.43
PRPF40A-201ENST00000354363 CAP2P40123 477 aa17.73■□□□□ 0.43
PRPF40A-201ENST00000354363 SPP2Q13103 211 aa17.73■□□□□ 0.43
PRPF40A-201ENST00000354363 TREML2Q5T2D2 321 aa17.73■□□□□ 0.43
PRPF40A-201ENST00000354363 SMCR8Q8TEV9 937 aaPredicted RBP17.73■□□□□ 0.43
PRPF40A-201ENST00000354363 ZNF512BQ96KM6 892 aaPredicted RBP17.73■□□□□ 0.43
PRPF40A-201ENST00000354363 HERC5Q9UII4 1024 aaKnown RBP17.73■□□□□ 0.43
PRPF40A-201ENST00000354363 PLCG2P16885 1265 aa17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 PPP4CP60510 307 aa17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 ADGRA1Q86SQ6 560 aa17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 PROCA1Q8NCQ7 364 aaPredicted RBP17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 ZNF280CQ8ND82 737 aa17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 TBC1D2Q9BYX2 928 aa17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 PCDH10Q9P2E7 1040 aa17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 CCL5P13501 91 aa17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 ZAP70P43403 619 aa17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 HABP4Q5JVS0 413 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 SLAIN1Q8ND83 568 aa17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 DHX36Q9H2U1 1008 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 TLR7Q9NYK1 1049 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 PI4KBQ9UBF8 816 aa17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 BIN2Q9UBW5 565 aaPredicted RBP17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 DBNLQ9UJU6 430 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-201ENST00000354363 CEP290O15078 2479 aa17.71■□□□□ 0.43
PRPF40A-201ENST00000354363 USP17L5A8MUK1 530 aa17.71■□□□□ 0.43
PRPF40A-201ENST00000354363 UBXN2AP68543 259 aa17.71■□□□□ 0.43
PRPF40A-201ENST00000354363 MAPKAPK5Q8IW41 473 aa17.71■□□□□ 0.43
PRPF40A-201ENST00000354363 ANKRD13CQ8N6S4 541 aa17.71■□□□□ 0.43
PRPF40A-201ENST00000354363 TGFBRAP1Q8WUH2 860 aa17.71■□□□□ 0.43
PRPF40A-201ENST00000354363 CCDC8Q9H0W5 538 aaPredicted RBP17.71■□□□□ 0.43
PRPF40A-201ENST00000354363 PIH1D3Q9NQM4 214 aaKnown RBP17.71■□□□□ 0.43
PRPF40A-201ENST00000354363 PNMA3Q9UL41 463 aa17.71■□□□□ 0.43
PRPF40A-201ENST00000354363 IGSF3O75054 1194 aa17.7■□□□□ 0.42
PRPF40A-201ENST00000354363 GJB1P08034 283 aa17.7■□□□□ 0.42
PRPF40A-201ENST00000354363 FLT3LGP49771 235 aa17.7■□□□□ 0.42
PRPF40A-201ENST00000354363 HMGCS2P54868 508 aa17.7■□□□□ 0.42
PRPF40A-201ENST00000354363 NKX2-3Q8TAU0 364 aa17.7■□□□□ 0.42
PRPF40A-201ENST00000354363 EAF2Q96CJ1 260 aaPredicted RBP17.7■□□□□ 0.42
PRPF40A-201ENST00000354363 RNF208Q9H0X6 261 aa17.7■□□□□ 0.42
PRPF40A-201ENST00000354363 FLT1P17948 1338 aa17.7■□□□□ 0.42
PRPF40A-201ENST00000354363 TNPO2O14787 897 aaKnown RBP17.69■□□□□ 0.42
PRPF40A-201ENST00000354363 ADCY3O60266 1144 aa17.69■□□□□ 0.42
PRPF40A-201ENST00000354363 GJA8P48165 433 aa17.69■□□□□ 0.42
PRPF40A-201ENST00000354363 FAM110CQ1W6H9 321 aa17.69■□□□□ 0.42
PRPF40A-201ENST00000354363 SH3D19Q5HYK7 790 aa17.69■□□□□ 0.42
PRPF40A-201ENST00000354363 CEP85Q6P2H3 762 aa17.69■□□□□ 0.42
PRPF40A-201ENST00000354363 DNAJC18Q9H819 358 aa17.69■□□□□ 0.42
PRPF40A-201ENST00000354363 METTL16Q86W50 562 aaKnown RBP17.69■□□□□ 0.42
PRPF40A-201ENST00000354363 AS3MTQ9HBK9 375 aa17.69■□□□□ 0.42
PRPF40A-201ENST00000354363 PLXNB2O15031 1838 aa17.68■□□□□ 0.42
PRPF40A-201ENST00000354363 DYNLL1P63167 89 aaKnown RBP17.68■□□□□ 0.42
PRPF40A-201ENST00000354363 JAG1P78504 1218 aa17.68■□□□□ 0.42
PRPF40A-201ENST00000354363 PABPC4Q13310 644 aaKnown RBP eCLIP17.68■□□□□ 0.42
PRPF40A-201ENST00000354363 IRF5Q13568 498 aa17.68■□□□□ 0.42
PRPF40A-201ENST00000354363 FOXP4Q8IVH2 680 aaPredicted RBP17.68■□□□□ 0.42
PRPF40A-201ENST00000354363 PXYLP1Q8TE99 480 aa17.68■□□□□ 0.42
PRPF40A-201ENST00000354363 WDR18Q9BV38 432 aa17.68■□□□□ 0.42
PRPF40A-201ENST00000354363 UNC93B1Q9H1C4 597 aa17.68■□□□□ 0.42
PRPF40A-201ENST00000354363 PALD1Q9ULE6 856 aa17.68■□□□□ 0.42
PRPF40A-201ENST00000354363 ASNSP08243 561 aa17.67■□□□□ 0.42
PRPF40A-201ENST00000354363 ELNP15502 786 aa17.67■□□□□ 0.42
PRPF40A-201ENST00000354363 CYP7A1P22680 504 aa17.67■□□□□ 0.42
PRPF40A-201ENST00000354363 GCLCP48506 637 aaPredicted RBP17.67■□□□□ 0.42
PRPF40A-201ENST00000354363 DIEXFQ68CQ4 756 aaKnown RBP17.67■□□□□ 0.42
PRPF40A-201ENST00000354363 COA7Q96BR5 231 aa17.67■□□□□ 0.42
PRPF40A-201ENST00000354363 ASCC2Q9H1I8 757 aaPredicted RBP17.67■□□□□ 0.42
PRPF40A-201ENST00000354363 ZBED9Q6R2W3 1325 aa17.67■□□□□ 0.42
PRPF40A-201ENST00000354363 INHAP05111 366 aa17.66■□□□□ 0.42
PRPF40A-201ENST00000354363 UBE2Q1Q7Z7E8 422 aa17.66■□□□□ 0.42
PRPF40A-201ENST00000354363 CRACR2BQ8N4Y2 399 aaPredicted RBP17.66■□□□□ 0.42
PRPF40A-201ENST00000354363 PANK1Q8TE04 598 aa17.66■□□□□ 0.42
PRPF40A-201ENST00000354363 U2AF1L4Q8WU68 220 aaKnown RBP17.66■□□□□ 0.42
PRPF40A-201ENST00000354363 SAP30BPQ9UHR5 308 aaKnown RBP17.66■□□□□ 0.42
PRPF40A-201ENST00000354363 EXOC6BQ9Y2D4 811 aa17.66■□□□□ 0.42
PRPF40A-201ENST00000354363 NDUFB9Q9Y6M9 179 aa17.66■□□□□ 0.42
PRPF40A-201ENST00000354363 H0YGN5 161 aa17.65■□□□□ 0.42
PRPF40A-201ENST00000354363 IDH1O75874 414 aaKnown RBP17.65■□□□□ 0.42
PRPF40A-201ENST00000354363 BACE1P56817 501 aa17.65■□□□□ 0.42
PRPF40A-201ENST00000354363 MTMR2Q13614 643 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms