RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 TUBB4AP04350 444 aa25.23■■□□□ 1.63
SHMT1-201ENST00000316694 IFNAR1P17181 557 aa25.23■■□□□ 1.63
SHMT1-201ENST00000316694 TOB1P50616 345 aaPredicted RBP25.23■■□□□ 1.63
SHMT1-201ENST00000316694 ZNF771Q7L3S4 317 aaPredicted RBP25.23■■□□□ 1.63
SHMT1-201ENST00000316694 TRIM22Q8IYM9 498 aa25.23■■□□□ 1.63
SHMT1-201ENST00000316694 CNNM2Q9H8M5 875 aa25.23■■□□□ 1.63
SHMT1-201ENST00000316694 HOOK1Q9UJC3 728 aaKnown RBP25.23■■□□□ 1.63
SHMT1-201ENST00000316694 CHD4Q14839 1912 aa25.23■■□□□ 1.63
SHMT1-201ENST00000316694 TDO2P48775 406 aa25.23■■□□□ 1.63
SHMT1-201ENST00000316694 KRT23Q9C075 422 aa25.23■■□□□ 1.63
SHMT1-201ENST00000316694 TMX1Q9H3N1 280 aa25.23■■□□□ 1.63
SHMT1-201ENST00000316694 GABPB1Q06547 395 aaPredicted RBP25.22■■□□□ 1.63
SHMT1-201ENST00000316694 RTN1Q16799 776 aa25.22■■□□□ 1.63
SHMT1-201ENST00000316694 INTS13Q9NVM9 706 aa25.22■■□□□ 1.63
SHMT1-201ENST00000316694 ZNF446Q9NWS9 450 aa25.22■■□□□ 1.63
SHMT1-201ENST00000316694 MROH5Q6ZUA9 1318 aa25.22■■□□□ 1.63
SHMT1-201ENST00000316694 GSG1L2A8MUP6 293 aa25.22■■□□□ 1.63
SHMT1-201ENST00000316694 POLR2DO15514 142 aaKnown RBP25.22■■□□□ 1.63
SHMT1-201ENST00000316694 SLC5A1P13866 664 aa25.22■■□□□ 1.63
SHMT1-201ENST00000316694 ATP2B1P20020 1258 aa25.22■■□□□ 1.63
SHMT1-201ENST00000316694 FGFR2P21802 821 aa25.22■■□□□ 1.63
SHMT1-201ENST00000316694 MDM2Q00987 491 aaPredicted RBP25.22■■□□□ 1.63
SHMT1-201ENST00000316694 POSTNQ15063 836 aa25.22■■□□□ 1.63
SHMT1-201ENST00000316694 PHLPP2Q6ZVD8 1323 aa25.21■■□□□ 1.63
SHMT1-201ENST00000316694 ZNF827Q17R98 1081 aa25.21■■□□□ 1.63
SHMT1-201ENST00000316694 PDILTQ8N807 584 aa25.21■■□□□ 1.63
SHMT1-201ENST00000316694 MAN1B1Q9UKM7 699 aa25.21■■□□□ 1.63
SHMT1-201ENST00000316694 PRR29P0C7W0 189 aa25.21■■□□□ 1.63
SHMT1-201ENST00000316694 WTAPQ15007 396 aa25.21■■□□□ 1.63
SHMT1-201ENST00000316694 TRIM65Q6PJ69 517 aa25.21■■□□□ 1.63
SHMT1-201ENST00000316694 FAM177A1Q8N128 213 aaPredicted RBP25.21■■□□□ 1.63
SHMT1-201ENST00000316694 STRCQ7RTU9 1775 aa25.2■■□□□ 1.63
SHMT1-201ENST00000316694 MYO1BO43795 1136 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 CDK11BP21127 795 aaKnown RBP25.2■■□□□ 1.62
SHMT1-201ENST00000316694 NR5A1Q13285 461 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 SART3Q15020 963 aaKnown RBP25.2■■□□□ 1.62
SHMT1-201ENST00000316694 ARHGAP29Q52LW3 1261 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 DZIP3Q86Y13 1208 aaKnown RBP25.2■■□□□ 1.62
SHMT1-201ENST00000316694 GRAMD1CQ8IYS0 662 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 SERTAD1Q9UHV2 236 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 FBXO2Q9UK22 296 aaPredicted RBP25.2■■□□□ 1.62
SHMT1-201ENST00000316694 BCL9O00512 1426 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 REXO1L1PQ8IX06 675 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 LCORLQ8N3X6 602 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 NUP133Q8WUM0 1156 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 PCDHB6Q9Y5E3 794 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 SLC4A4Q9Y6R1 1079 aa25.2■■□□□ 1.62
SHMT1-201ENST00000316694 LRP6O75581 1613 aa25.19■■□□□ 1.62
SHMT1-201ENST00000316694 URI1O94763 535 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-201ENST00000316694 FMR1Q06787 632 aaKnown RBP eCLIP25.19■■□□□ 1.62
SHMT1-201ENST00000316694 TRMT44Q8IYL2 757 aaKnown RBP25.19■■□□□ 1.62
SHMT1-201ENST00000316694 NFE2L3Q9Y4A8 694 aa25.19■■□□□ 1.62
SHMT1-201ENST00000316694 NUP98P52948 1817 aa25.19■■□□□ 1.62
SHMT1-201ENST00000316694 ERICH2A1L162 156 aa25.19■■□□□ 1.62
SHMT1-201ENST00000316694 H2AFXP16104 143 aaPredicted RBP25.19■■□□□ 1.62
SHMT1-201ENST00000316694 RILPL1Q5EBL4 403 aa25.19■■□□□ 1.62
SHMT1-201ENST00000316694 NACAP1Q9BZK3 213 aa25.19■■□□□ 1.62
SHMT1-201ENST00000316694 ANKRD36CQ5JPF3 1778 aa25.18■■□□□ 1.62
SHMT1-201ENST00000316694 FANCGO15287 622 aa25.18■■□□□ 1.62
SHMT1-201ENST00000316694 ZSCAN12O43309 604 aa25.18■■□□□ 1.62
SHMT1-201ENST00000316694 PTPREP23469 700 aa25.18■■□□□ 1.62
SHMT1-201ENST00000316694 MIGA1Q8NAN2 632 aa25.18■■□□□ 1.62
SHMT1-201ENST00000316694 SMARCE1Q969G3 411 aa25.18■■□□□ 1.62
SHMT1-201ENST00000316694 MPHOSPH8Q99549 860 aa25.18■■□□□ 1.62
SHMT1-201ENST00000316694 MNS1Q8NEH6 495 aa25.18■■□□□ 1.62
SHMT1-201ENST00000316694 FOXP1Q9H334 677 aaPredicted RBP25.18■■□□□ 1.62
SHMT1-201ENST00000316694 ARHGAP6O43182 974 aa25.17■■□□□ 1.62
SHMT1-201ENST00000316694 TMEM139Q8IV31 216 aa25.17■■□□□ 1.62
SHMT1-201ENST00000316694 PPP2R2CQ9Y2T4 447 aa25.17■■□□□ 1.62
SHMT1-201ENST00000316694 CRACR2BQ8N4Y2 399 aaPredicted RBP25.17■■□□□ 1.62
SHMT1-201ENST00000316694 STAG1Q8WVM7 1258 aa25.17■■□□□ 1.62
SHMT1-201ENST00000316694 UBXN4Q92575 508 aa25.17■■□□□ 1.62
SHMT1-201ENST00000316694 BAG1Q99933 345 aaPredicted RBP25.17■■□□□ 1.62
SHMT1-201ENST00000316694 DEXIO95424 95 aa25.16■■□□□ 1.62
SHMT1-201ENST00000316694 CLCN6P51797 869 aa25.16■■□□□ 1.62
SHMT1-201ENST00000316694 OXER1Q8TDS5 423 aa25.16■■□□□ 1.62
SHMT1-201ENST00000316694 SEC31BQ9NQW1 1179 aa25.16■■□□□ 1.62
SHMT1-201ENST00000316694 FAM53CQ9NYF3 392 aa25.16■■□□□ 1.62
SHMT1-201ENST00000316694 SLFN14P0C7P3 912 aa25.15■■□□□ 1.62
SHMT1-201ENST00000316694 BCAMP50895 628 aa25.15■■□□□ 1.62
SHMT1-201ENST00000316694 ADKP55263 362 aaKnown RBP25.15■■□□□ 1.62
SHMT1-201ENST00000316694 USP49Q70CQ1 688 aa25.15■■□□□ 1.62
SHMT1-201ENST00000316694 FCHSD1Q86WN1 690 aa25.15■■□□□ 1.62
SHMT1-201ENST00000316694 ELOA2Q8IYF1 753 aaPredicted RBP25.15■■□□□ 1.62
SHMT1-201ENST00000316694 MLKLQ8NB16 471 aa25.15■■□□□ 1.62
SHMT1-201ENST00000316694 ST7Q9NRC1 585 aa25.15■■□□□ 1.62
SHMT1-201ENST00000316694 DACH1Q9UI36 760 aa25.15■■□□□ 1.62
SHMT1-201ENST00000316694 VWA3AA6NCI4 1184 aa25.14■■□□□ 1.62
SHMT1-201ENST00000316694 CABP5Q9NP86 173 aa25.14■■□□□ 1.62
SHMT1-201ENST00000316694 CCDC196A0A1B0GTZ2 297 aa25.14■■□□□ 1.61
SHMT1-201ENST00000316694 EXOC5O00471 708 aa25.14■■□□□ 1.61
SHMT1-201ENST00000316694 TBX2Q13207 712 aaPredicted RBP25.14■■□□□ 1.61
SHMT1-201ENST00000316694 SPECC1LQ69YQ0 1117 aa25.14■■□□□ 1.61
SHMT1-201ENST00000316694 ZNF654Q8IZM8 581 aa25.14■■□□□ 1.61
SHMT1-201ENST00000316694 FANCBQ8NB91 859 aa25.14■■□□□ 1.61
SHMT1-201ENST00000316694 LRP2BPQ9P2M1 347 aa25.14■■□□□ 1.61
SHMT1-201ENST00000316694 NID2Q14112 1375 aa25.14■■□□□ 1.61
SHMT1-201ENST00000316694 ZNF18P17022 549 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 GNAT2P19087 354 aa25.13■■□□□ 1.61
SHMT1-201ENST00000316694 MORC3Q14149 939 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms