RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 UBXN1Q04323 297 aa13.4□□□□□ -0.26
PCF11-201ENST00000298281 NIP7Q9Y221 180 aaKnown RBP eCLIP13.4□□□□□ -0.26
PCF11-201ENST00000298281 TUBB2AQ13885 445 aa13.4□□□□□ -0.26
PCF11-201ENST00000298281 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.4□□□□□ -0.26
PCF11-201ENST00000298281 TTC6Q86TZ1 520 aa13.4□□□□□ -0.26
PCF11-201ENST00000298281 NECAB1Q8N987 351 aa13.4□□□□□ -0.26
PCF11-201ENST00000298281 TUBB2BQ9BVA1 445 aa13.4□□□□□ -0.26
PCF11-201ENST00000298281 USH1CQ9Y6N9 552 aa13.4□□□□□ -0.26
PCF11-201ENST00000298281 IVNS1ABPQ9Y6Y0 642 aa13.4□□□□□ -0.26
PCF11-201ENST00000298281 ADGRF5Q8IZF2 1346 aa13.4□□□□□ -0.26
PCF11-201ENST00000298281 MICAL3Q7RTP6 2002 aa13.4□□□□□ -0.26
PCF11-201ENST00000298281 INTS4Q96HW7 963 aaKnown RBP13.4□□□□□ -0.26
PCF11-201ENST00000298281 NOS1P29475 1434 aa13.4□□□□□ -0.27
PCF11-201ENST00000298281 RAPGEF1Q13905 1077 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 CCDC186Q7Z3E2 898 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 USP48Q86UV5 1035 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 ZNF830Q96NB3 372 aaPredicted RBP13.39□□□□□ -0.27
PCF11-201ENST00000298281 ANLNQ9NQW6 1124 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 TMOD4Q9NZQ9 345 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 PYGLP06737 847 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 TRIM14Q14142 442 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 NR1H4Q96RI1 486 aaPredicted RBP13.39□□□□□ -0.27
PCF11-201ENST00000298281 MED10Q9BTT4 135 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 MAP3K1Q13233 1512 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 MAP3K7CLP57077 242 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 CCDC169A6NNP5 214 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 I3L4J1 428 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 TOM1O60784 492 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 MARCKSP29966 332 aaPredicted RBP13.39□□□□□ -0.27
PCF11-201ENST00000298281 PLCD1P51178 756 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 CROCCP2Q86T23 111 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 DCLK2Q8N568 766 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 SPDL1Q96EA4 605 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 MCM9Q9NXL9 1143 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 LMCD1Q9NZU5 365 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 RNF113AO15541 343 aaKnown RBP13.39□□□□□ -0.27
PCF11-201ENST00000298281 DHX32Q7L7V1 743 aaKnown RBP13.39□□□□□ -0.27
PCF11-201ENST00000298281 LMNTD2Q8IXW0 634 aa13.39□□□□□ -0.27
PCF11-201ENST00000298281 RBM46Q8TBY0 533 aaKnown RBP13.39□□□□□ -0.27
PCF11-201ENST00000298281 PPFIA3O75145 1194 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 SMTNP53814 917 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 FOXD4Q12950 439 aaPredicted RBP13.38□□□□□ -0.27
PCF11-201ENST00000298281 BSPRYQ5W0U4 402 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 SCHIP1Q9P0W5 487 aaPredicted RBP13.38□□□□□ -0.27
PCF11-201ENST00000298281 CNPY2Q9Y2B0 182 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 NUB1Q9Y5A7 615 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 FAM95CA0A1B0GW59 222 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 LDHBP07195 334 aaKnown RBP13.38□□□□□ -0.27
PCF11-201ENST00000298281 EPB41P11171 864 aaKnown RBP13.38□□□□□ -0.27
PCF11-201ENST00000298281 STRN3Q13033 797 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 SDCCAG3Q96C92 435 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 BUB1BO60566 1050 aaPredicted RBP13.38□□□□□ -0.27
PCF11-201ENST00000298281 TYRO3Q06418 890 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 IFRD2Q12894 506 aaPredicted RBP13.38□□□□□ -0.27
PCF11-201ENST00000298281 NR1I2O75469 434 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 HACE1Q8IYU2 909 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 MEIS3Q99687 375 aa13.38□□□□□ -0.27
PCF11-201ENST00000298281 ZHX1Q9UKY1 873 aaPredicted RBP13.38□□□□□ -0.27
PCF11-201ENST00000298281 RTCBQ9Y3I0 505 aaKnown RBP13.38□□□□□ -0.27
PCF11-201ENST00000298281 ASXL1Q8IXJ9 1541 aa13.37□□□□□ -0.27
PCF11-201ENST00000298281 SPOPO43791 374 aa13.37□□□□□ -0.27
PCF11-201ENST00000298281 UTP11Q9Y3A2 253 aaKnown RBP13.37□□□□□ -0.27
PCF11-201ENST00000298281 NPR1P16066 1061 aa13.37□□□□□ -0.27
PCF11-201ENST00000298281 DDB1Q16531 1140 aa13.37□□□□□ -0.27
PCF11-201ENST00000298281 CAPN2P17655 700 aa13.37□□□□□ -0.27
PCF11-201ENST00000298281 FAM47CQ5HY64 1035 aa13.37□□□□□ -0.27
PCF11-201ENST00000298281 SV2BQ7L1I2 683 aa13.37□□□□□ -0.27
PCF11-201ENST00000298281 ACTN4O43707 911 aaKnown RBP13.37□□□□□ -0.27
PCF11-201ENST00000298281 XPAP23025 273 aaPredicted RBP13.37□□□□□ -0.27
PCF11-201ENST00000298281 SCYL1Q96KG9 808 aa13.37□□□□□ -0.27
PCF11-201ENST00000298281 RPRD2Q5VT52 1461 aaKnown RBP13.37□□□□□ -0.27
PCF11-201ENST00000298281 DNAJC25Q9H1X3 360 aa13.37□□□□□ -0.27
PCF11-201ENST00000298281 ATP6V0A1Q93050 837 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 HAUS3Q68CZ6 603 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 ELP1O95163 1332 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 ZNF449Q6P9G9 518 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 RYBPQ8N488 228 aaPredicted RBP13.36□□□□□ -0.27
PCF11-201ENST00000298281 HOOK2Q96ED9 719 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 NOX5Q96PH1 765 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 TEKT2Q9UIF3 430 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 ZKSCAN5Q9Y2L8 839 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 NBPF11Q86T75 865 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 NEUROG2Q9H2A3 272 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 PARP1P09874 1014 aaKnown RBP13.36□□□□□ -0.27
PCF11-201ENST00000298281 HPDP32754 393 aaPredicted RBP13.36□□□□□ -0.27
PCF11-201ENST00000298281 JADE1Q6IE81 842 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 PARP3Q9Y6F1 533 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 PCF11O94913 1555 aaKnown RBP13.36□□□□□ -0.27
PCF11-201ENST00000298281 APOEP02649 317 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 DZIP3Q86Y13 1208 aaKnown RBP13.36□□□□□ -0.27
PCF11-201ENST00000298281 LRRC2Q9BYS8 371 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 GUCA1BQ9UMX6 200 aa13.36□□□□□ -0.27
PCF11-201ENST00000298281 KRT19P08727 400 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 DNM1Q05193 864 aaKnown RBP13.35□□□□□ -0.27
PCF11-201ENST00000298281 RAB3GAP1Q15042 981 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 TSHZ3Q63HK5 1081 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 PPP4R1Q8TF05 950 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 CNNM4Q6P4Q7 775 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 AFAP1L1Q8TED9 768 aa13.35□□□□□ -0.27
PCF11-201ENST00000298281 VPS18Q9P253 973 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms