RNA–Protein interactions for RNA: ENST00000641375.1

PHGDH-216, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,196 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-216ENST00000641375 MACF1Q9UPN3 7388 aaKnown RBP5.78□□□□□ -1.48
PHGDH-216ENST00000641375 SPRR2FQ96RM1 72 aa5.73□□□□□ -1.49
PHGDH-216ENST00000641375 KRTAP19-3Q7Z4W3 81 aa5.68□□□□□ -1.5
PHGDH-216ENST00000641375 MUC12Q9UKN1 5478 aa5.66□□□□□ -1.5
PHGDH-216ENST00000641375 MT1GP13640 62 aa5.65□□□□□ -1.5
PHGDH-216ENST00000641375 KRTAP4-7Q9BYR0 210 aa5.64□□□□□ -1.51
PHGDH-216ENST00000641375 KRTAP5-9P26371 169 aa5.61□□□□□ -1.51
PHGDH-216ENST00000641375 KRTAP9-6A0A140TA67 174 aa5.6□□□□□ -1.51
PHGDH-216ENST00000641375 SYNE2Q8WXH0 6885 aaKnown RBP5.59□□□□□ -1.51
PHGDH-216ENST00000641375 MT1MQ8N339 61 aa5.57□□□□□ -1.52
PHGDH-216ENST00000641375 LCE5AQ5TCM9 118 aa5.56□□□□□ -1.52
PHGDH-216ENST00000641375 KRTAP9-6A8MVA2 160 aa5.51□□□□□ -1.53
PHGDH-216ENST00000641375 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.5□□□□□ -1.53
PHGDH-216ENST00000641375 KRTAP6-3Q3LI67 103 aa5.44□□□□□ -1.54
PHGDH-216ENST00000641375 LCE1AQ5T7P2 110 aa5.44□□□□□ -1.54
PHGDH-216ENST00000641375 KRTAP4-3Q9BYR4 195 aa5.44□□□□□ -1.54
PHGDH-216ENST00000641375 MDN1Q9NU22 5596 aa5.42□□□□□ -1.54
PHGDH-216ENST00000641375 SPRR2EP22531 72 aa5.39□□□□□ -1.55
PHGDH-216ENST00000641375 SPRR2BP35325 72 aa5.39□□□□□ -1.55
PHGDH-216ENST00000641375 SPRR2AP35326 72 aa5.39□□□□□ -1.55
PHGDH-216ENST00000641375 LOC100996750A0A140TA64 210 aa5.29□□□□□ -1.56
PHGDH-216ENST00000641375 KRTAP2-3P0C7H8 128 aa5.26□□□□□ -1.57
PHGDH-216ENST00000641375 KRTAP2-4Q9BYR9 128 aa5.26□□□□□ -1.57
PHGDH-216ENST00000641375 KRTAP2-1Q9BYU5 128 aa5.26□□□□□ -1.57
PHGDH-216ENST00000641375 DSTQ03001 7570 aaKnown RBP5.24□□□□□ -1.57
PHGDH-216ENST00000641375 SPRR2DP22532 72 aa5.19□□□□□ -1.58
PHGDH-216ENST00000641375 KRTAP9-7A8MTY7 169 aa5.16□□□□□ -1.58
PHGDH-216ENST00000641375 KRTAP5-5Q701N2 237 aaPredicted RBP5.01□□□□□ -1.61
PHGDH-216ENST00000641375 NEBP20929 6669 aa5□□□□□ -1.61
PHGDH-216ENST00000641375 LCE3BQ5TA77 95 aa4.97□□□□□ -1.61
PHGDH-216ENST00000641375 MT1AP04731 61 aa4.95□□□□□ -1.62
PHGDH-216ENST00000641375 KRTAP6-1Q3LI64 71 aa4.9□□□□□ -1.62
PHGDH-216ENST00000641375 SYNE1Q8NF91 8797 aaKnown RBP4.75□□□□□ -1.65
PHGDH-216ENST00000641375 KRTAP12-4P60329 112 aa4.72□□□□□ -1.65
PHGDH-216ENST00000641375 KRTAP5-4Q6L8H1 288 aa4.71□□□□□ -1.65
PHGDH-216ENST00000641375 KRTAP9-4Q9BYQ2 154 aa4.7□□□□□ -1.66
PHGDH-216ENST00000641375 KRTAP2-2Q9BYT5 123 aa4.64□□□□□ -1.67
PHGDH-216ENST00000641375 LCE4AQ5TA78 99 aa4.61□□□□□ -1.67
PHGDH-216ENST00000641375 KRTAP20-1Q3LI63 56 aa4.59□□□□□ -1.67
PHGDH-216ENST00000641375 KRTAP4-9Q9BYQ8 210 aa4.53□□□□□ -1.68
PHGDH-216ENST00000641375 MT3P25713 68 aa4.5□□□□□ -1.69
PHGDH-216ENST00000641375 KRTAP6-2Q3LI66 62 aa4.5□□□□□ -1.69
PHGDH-216ENST00000641375 MT4P47944 62 aa4.49□□□□□ -1.69
PHGDH-216ENST00000641375 KRTAP4-6Q9BYQ5 205 aa4.47□□□□□ -1.69
PHGDH-216ENST00000641375 LCE3DQ9BYE3 92 aa4.43□□□□□ -1.7
PHGDH-216ENST00000641375 KRTAP20-2Q3LI61 65 aa4.4□□□□□ -1.7
PHGDH-216ENST00000641375 LCE1DQ5T752 114 aa4.39□□□□□ -1.71
PHGDH-216ENST00000641375 HMCN1Q96RW7 5635 aa4.34□□□□□ -1.71
PHGDH-216ENST00000641375 LCE3EQ5T5B0 92 aa4.32□□□□□ -1.72
PHGDH-216ENST00000641375 KRTAP5-2Q701N4 177 aa4.3□□□□□ -1.72
PHGDH-216ENST00000641375 PRM1P04553 51 aa4.24□□□□□ -1.73
PHGDH-216ENST00000641375 KRTAP5-3Q6L8H2 238 aa4.23□□□□□ -1.73
PHGDH-216ENST00000641375 OBSCNQ5VST9 7968 aa4.11□□□□□ -1.75
PHGDH-216ENST00000641375 LCE1EQ5T753 118 aa3.87□□□□□ -1.79
PHGDH-216ENST00000641375 KRTAP4-11Q9BYQ6 195 aa3.79□□□□□ -1.8
PHGDH-216ENST00000641375 AHNAK2Q8IVF2 5795 aa3.74□□□□□ -1.81
PHGDH-216ENST00000641375 KRTAP5-1Q6L8H4 278 aa3.69□□□□□ -1.82
PHGDH-216ENST00000641375 KRTAP5-10Q6L8G5 202 aa3.64□□□□□ -1.83
PHGDH-216ENST00000641375 KRTAP5-8O75690 187 aa3.63□□□□□ -1.83
PHGDH-216ENST00000641375 LCE1BQ5T7P3 118 aa3.62□□□□□ -1.83
PHGDH-216ENST00000641375 LCE1CQ5T751 118 aa3.62□□□□□ -1.83
PHGDH-216ENST00000641375 MUC5ACP98088 5654 aa3.61□□□□□ -1.83
PHGDH-216ENST00000641375 KRTAP4-2Q9BYR5 136 aa3.58□□□□□ -1.84
PHGDH-216ENST00000641375 KRTAP5-7Q6L8G8 165 aa3.56□□□□□ -1.84
PHGDH-216ENST00000641375 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.39□□□□□ -1.87
PHGDH-216ENST00000641375 GPR98Q8WXG9 6306 aa3.36□□□□□ -1.87
PHGDH-216ENST00000641375 KRTAP9-9Q9BYP9 154 aa3.27□□□□□ -1.89
PHGDH-216ENST00000641375 KRTAP21-2Q3LI59 83 aa3.21□□□□□ -1.9
PHGDH-216ENST00000641375 KRTAP5-11Q6L8G4 156 aa3.17□□□□□ -1.9
PHGDH-216ENST00000641375 MUC5BQ9HC84 5762 aaPredicted RBP3.1□□□□□ -1.91
PHGDH-216ENST00000641375 LCE1FQ5T754 118 aa2.97□□□□□ -1.93
PHGDH-216ENST00000641375 KRTAP4-12Q9BQ66 201 aa2.93□□□□□ -1.94
PHGDH-216ENST00000641375 KRTAP4-4Q9BYR3 166 aa2.83□□□□□ -1.96
PHGDH-216ENST00000641375 KRTAP21-1Q3LI58 79 aa2.8□□□□□ -1.96
PHGDH-216ENST00000641375 AHNAKQ09666 5890 aaKnown RBP2.73□□□□□ -1.97
PHGDH-216ENST00000641375 PHGR1C9JFL3 82 aa2.72□□□□□ -1.97
PHGDH-216ENST00000641375 MUC19Q7Z5P9 8384 aa2.44□□□□□ -2.02
PHGDH-216ENST00000641375 MUC16Q8WXI7 14507 aa1.79□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 18.8 ms