RNA–Protein interactions for RNA: ENST00000640341.1

SCARB2-221, Transcript of scavenger receptor class B member 2, humanhuman

TSL 5

Gene SCARB2, Length 3,403 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-221ENST00000640341 CRCT1Q9UGL9 99 aa4.97□□□□□ -1.61
SCARB2-221ENST00000640341 MACF1Q9UPN3 7388 aaKnown RBP4.95□□□□□ -1.62
SCARB2-221ENST00000640341 KRTAP4-3Q9BYR4 195 aa4.93□□□□□ -1.62
SCARB2-221ENST00000640341 LOC100996750A0A140TA64 210 aa4.92□□□□□ -1.62
SCARB2-221ENST00000640341 KRTAP9-2Q9BYQ4 174 aa4.9□□□□□ -1.63
SCARB2-221ENST00000640341 KRTAP2-3P0C7H8 128 aa4.88□□□□□ -1.63
SCARB2-221ENST00000640341 KRTAP2-4Q9BYR9 128 aa4.88□□□□□ -1.63
SCARB2-221ENST00000640341 KRTAP2-1Q9BYU5 128 aa4.88□□□□□ -1.63
SCARB2-221ENST00000640341 MT1GP13640 62 aa4.85□□□□□ -1.63
SCARB2-221ENST00000640341 SYNE1Q8NF91 8797 aaKnown RBP4.79□□□□□ -1.64
SCARB2-221ENST00000640341 KRTAP19-6Q3LI70 58 aa4.76□□□□□ -1.65
SCARB2-221ENST00000640341 LCE2DQ5TA82 110 aaPredicted RBP4.74□□□□□ -1.65
SCARB2-221ENST00000640341 OBSCNQ5VST9 7968 aa4.72□□□□□ -1.65
SCARB2-221ENST00000640341 MDN1Q9NU22 5596 aa4.69□□□□□ -1.66
SCARB2-221ENST00000640341 SPRR2FQ96RM1 72 aa4.68□□□□□ -1.66
SCARB2-221ENST00000640341 MT1MQ8N339 61 aa4.67□□□□□ -1.66
SCARB2-221ENST00000640341 KRTAP19-4Q3LI73 84 aa4.67□□□□□ -1.66
SCARB2-221ENST00000640341 KRTAP19-3Q7Z4W3 81 aa4.66□□□□□ -1.66
SCARB2-221ENST00000640341 KRTAP12-4P60329 112 aa4.55□□□□□ -1.68
SCARB2-221ENST00000640341 LCE3BQ5TA77 95 aa4.55□□□□□ -1.68
SCARB2-221ENST00000640341 KRTAP4-9Q9BYQ8 210 aa4.5□□□□□ -1.69
SCARB2-221ENST00000640341 LCE5AQ5TCM9 118 aa4.44□□□□□ -1.7
SCARB2-221ENST00000640341 KRTAP9-6A0A140TA67 174 aa4.4□□□□□ -1.7
SCARB2-221ENST00000640341 SPRR2EP22531 72 aa4.33□□□□□ -1.72
SCARB2-221ENST00000640341 SPRR2BP35325 72 aa4.33□□□□□ -1.72
SCARB2-221ENST00000640341 SPRR2AP35326 72 aa4.33□□□□□ -1.72
SCARB2-221ENST00000640341 KRTAP6-1Q3LI64 71 aa4.31□□□□□ -1.72
SCARB2-221ENST00000640341 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.3□□□□□ -1.72
SCARB2-221ENST00000640341 LCE3DQ9BYE3 92 aa4.19□□□□□ -1.74
SCARB2-221ENST00000640341 LCE1AQ5T7P2 110 aa4.17□□□□□ -1.74
SCARB2-221ENST00000640341 MT1AP04731 61 aa4.14□□□□□ -1.75
SCARB2-221ENST00000640341 SPRR2DP22532 72 aa4.12□□□□□ -1.75
SCARB2-221ENST00000640341 KRTAP9-7A8MTY7 169 aa4.12□□□□□ -1.75
SCARB2-221ENST00000640341 LCE3EQ5T5B0 92 aa4.11□□□□□ -1.75
SCARB2-221ENST00000640341 PRM1P04553 51 aa4.04□□□□□ -1.76
SCARB2-221ENST00000640341 KRTAP5-9P26371 169 aa4.02□□□□□ -1.77
SCARB2-221ENST00000640341 KRTAP6-3Q3LI67 103 aa3.98□□□□□ -1.77
SCARB2-221ENST00000640341 KRTAP5-5Q701N2 237 aaPredicted RBP3.98□□□□□ -1.77
SCARB2-221ENST00000640341 NEBP20929 6669 aa3.91□□□□□ -1.78
SCARB2-221ENST00000640341 KRTAP9-4Q9BYQ2 154 aa3.91□□□□□ -1.78
SCARB2-221ENST00000640341 KRTAP6-2Q3LI66 62 aa3.89□□□□□ -1.79
SCARB2-221ENST00000640341 MT4P47944 62 aa3.85□□□□□ -1.79
SCARB2-221ENST00000640341 MT3P25713 68 aa3.77□□□□□ -1.81
SCARB2-221ENST00000640341 KRTAP4-6Q9BYQ5 205 aa3.66□□□□□ -1.82
SCARB2-221ENST00000640341 KRTAP20-1Q3LI63 56 aa3.58□□□□□ -1.84
SCARB2-221ENST00000640341 HMCN1Q96RW7 5635 aa3.58□□□□□ -1.84
SCARB2-221ENST00000640341 KRTAP2-2Q9BYT5 123 aa3.5□□□□□ -1.85
SCARB2-221ENST00000640341 LCE1DQ5T752 114 aa3.5□□□□□ -1.85
SCARB2-221ENST00000640341 MUC19Q7Z5P9 8384 aa3.43□□□□□ -1.86
SCARB2-221ENST00000640341 KRTAP5-4Q6L8H1 288 aa3.42□□□□□ -1.86
SCARB2-221ENST00000640341 KRTAP20-2Q3LI61 65 aa3.36□□□□□ -1.87
SCARB2-221ENST00000640341 MUC5ACP98088 5654 aa3.3□□□□□ -1.88
SCARB2-221ENST00000640341 LCE1EQ5T753 118 aa3.28□□□□□ -1.88
SCARB2-221ENST00000640341 LCE4AQ5TA78 99 aa3.28□□□□□ -1.88
SCARB2-221ENST00000640341 LCE1BQ5T7P3 118 aa3.26□□□□□ -1.89
SCARB2-221ENST00000640341 KRTAP5-2Q701N4 177 aa3.2□□□□□ -1.9
SCARB2-221ENST00000640341 KRTAP4-11Q9BYQ6 195 aa3.1□□□□□ -1.91
SCARB2-221ENST00000640341 KRTAP5-3Q6L8H2 238 aa3.09□□□□□ -1.91
SCARB2-221ENST00000640341 GPR98Q8WXG9 6306 aa3.02□□□□□ -1.93
SCARB2-221ENST00000640341 AHNAK2Q8IVF2 5795 aa2.99□□□□□ -1.93
SCARB2-221ENST00000640341 KRTAP5-10Q6L8G5 202 aa2.96□□□□□ -1.94
SCARB2-221ENST00000640341 MUC5BQ9HC84 5762 aaPredicted RBP2.91□□□□□ -1.94
SCARB2-221ENST00000640341 KRTAP4-2Q9BYR5 136 aa2.86□□□□□ -1.95
SCARB2-221ENST00000640341 LCE1FQ5T754 118 aa2.84□□□□□ -1.96
SCARB2-221ENST00000640341 KRTAP5-1Q6L8H4 278 aa2.82□□□□□ -1.96
SCARB2-221ENST00000640341 LCE1CQ5T751 118 aa2.79□□□□□ -1.96
SCARB2-221ENST00000640341 KRTAP4-4Q9BYR3 166 aa2.75□□□□□ -1.97
SCARB2-221ENST00000640341 KRTAP5-8O75690 187 aa2.74□□□□□ -1.97
SCARB2-221ENST00000640341 KRTAP21-2Q3LI59 83 aa2.7□□□□□ -1.98
SCARB2-221ENST00000640341 KRTAP4-12Q9BQ66 201 aa2.7□□□□□ -1.98
SCARB2-221ENST00000640341 KRTAP9-9Q9BYP9 154 aa2.55□□□□□ -2
SCARB2-221ENST00000640341 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.54□□□□□ -2
SCARB2-221ENST00000640341 AHNAKQ09666 5890 aaKnown RBP2.51□□□□□ -2.01
SCARB2-221ENST00000640341 KRTAP5-7Q6L8G8 165 aa2.47□□□□□ -2.01
SCARB2-221ENST00000640341 KRTAP21-1Q3LI58 79 aa2.37□□□□□ -2.03
SCARB2-221ENST00000640341 KRTAP5-11Q6L8G4 156 aa2.37□□□□□ -2.03
SCARB2-221ENST00000640341 PHGR1C9JFL3 82 aa2.08□□□□□ -2.08
SCARB2-221ENST00000640341 MUC16Q8WXI7 14507 aa1.43□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 10.8 ms