RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 LYSTQ99698 3801 aa0.29□□□□□ -2.36
CD44-239ENST00000639002 M0QZ58 72 aa0.28□□□□□ -2.36
CD44-239ENST00000639002 TNP1P09430 55 aa0.27□□□□□ -2.37
CD44-239ENST00000639002 GCC2Q8IWJ2 1684 aa0.27□□□□□ -2.37
CD44-239ENST00000639002 DEFB110Q30KQ9 67 aa0.26□□□□□ -2.37
CD44-239ENST00000639002 TNXBP22105 4242 aa0.25□□□□□ -2.37
CD44-239ENST00000639002 MROH2BQ7Z745 1585 aa0.23□□□□□ -2.37
CD44-239ENST00000639002 MUC17Q685J3 4493 aa0.23□□□□□ -2.37
CD44-239ENST00000639002 DNAH3Q8TD57 4116 aa0.23□□□□□ -2.37
CD44-239ENST00000639002 DNAH6Q9C0G6 4158 aa0.23□□□□□ -2.37
CD44-239ENST00000639002 POLR2KP53803 58 aaKnown RBP0.22□□□□□ -2.37
CD44-239ENST00000639002 SNRPGP62308 76 aaKnown RBP0.22□□□□□ -2.37
CD44-239ENST00000639002 DUOX1Q9NRD9 1551 aa0.22□□□□□ -2.37
CD44-239ENST00000639002 SPART-AS1P0CW21 52 aa0.21□□□□□ -2.38
CD44-239ENST00000639002 CLPSL2Q6UWE3 100 aa0.21□□□□□ -2.38
CD44-239ENST00000639002 VPS13DQ5THJ4 4388 aa0.2□□□□□ -2.38
CD44-239ENST00000639002 DNAH11Q96DT5 4516 aa0.19□□□□□ -2.38
CD44-239ENST00000639002 MT1AP04731 61 aa0.18□□□□□ -2.38
CD44-239ENST00000639002 KRTAP20-2Q3LI61 65 aa0.18□□□□□ -2.38
CD44-239ENST00000639002 SPRR2FQ96RM1 72 aa0.18□□□□□ -2.38
CD44-239ENST00000639002 TOMM7Q9P0U1 55 aa0.18□□□□□ -2.38
CD44-239ENST00000639002 VPS13BQ7Z7G8 4022 aa0.17□□□□□ -2.38
CD44-239ENST00000639002 DNAH17Q9UFH2 4485 aa0.17□□□□□ -2.38
CD44-239ENST00000639002 RPL39P62891 51 aaKnown RBP0.17□□□□□ -2.38
CD44-239ENST00000639002 KRTAP6-2Q3LI66 62 aa0.17□□□□□ -2.38
CD44-239ENST00000639002 SPRR2GQ9BYE4 73 aa0.16□□□□□ -2.38
CD44-239ENST00000639002 SMR3BP02814 79 aaPredicted RBP0.15□□□□□ -2.39
CD44-239ENST00000639002 RPL39LQ96EH5 51 aaKnown RBP0.14□□□□□ -2.39
CD44-239ENST00000639002 LINC01590Q5TEZ4 76 aa0.13□□□□□ -2.39
CD44-239ENST00000639002 KRTAP8-1Q8IUC2 63 aa0.13□□□□□ -2.39
CD44-239ENST00000639002 DNAH2Q9P225 4427 aa0.13□□□□□ -2.39
CD44-239ENST00000639002 DEFB1P60022 68 aa0.12□□□□□ -2.39
CD44-239ENST00000639002 LEAP2Q969E1 77 aa0.12□□□□□ -2.39
CD44-239ENST00000639002 FLGP20930 4061 aaPredicted RBP0.11□□□□□ -2.39
CD44-239ENST00000639002 KRTAP19-5Q3LI72 72 aa0.08□□□□□ -2.4
CD44-239ENST00000639002 ARHGAP5-AS1Q96IT6 56 aa0.08□□□□□ -2.4
CD44-239ENST00000639002 DNAH8Q96JB1 4490 aa0.07□□□□□ -2.4
CD44-239ENST00000639002 RHPN1-AS1Q9BWJ2 59 aa0.07□□□□□ -2.4
CD44-239ENST00000639002 MT1HP80294 61 aa0.05□□□□□ -2.4
CD44-239ENST00000639002 DEFB136Q30KP8 78 aa0.05□□□□□ -2.4
CD44-239ENST00000639002 KRTAP19-7Q3SYF9 63 aa0.05□□□□□ -2.4
CD44-239ENST00000639002 PRCDQ00LT1 54 aa0.04□□□□□ -2.4
CD44-239ENST00000639002 KRTAP6-1Q3LI64 71 aa0.03□□□□□ -2.4
CD44-239ENST00000639002 DEFB104AQ8WTQ1 72 aa0.02□□□□□ -2.41
CD44-239ENST00000639002 K7EIM0 57 aa0.01□□□□□ -2.41
CD44-239ENST00000639002 KRTAP19-8Q3LI54 63 aa0.01□□□□□ -2.41
CD44-239ENST00000639002 DEFB124Q8NES8 71 aa0.01□□□□□ -2.41
CD44-239ENST00000639002 MT1EP04732 61 aa0□□□□□ -2.41
CD44-239ENST00000639002 H3BUX3 64 aa-0.01□□□□□ -2.41
CD44-239ENST00000639002 TTTY10Q9BZA0 68 aa-0.01□□□□□ -2.41
CD44-239ENST00000639002 A0A096LNI7 61 aa-0.02□□□□□ -2.41
CD44-239ENST00000639002 HTN1P15515 57 aa-0.03□□□□□ -2.41
CD44-239ENST00000639002 DEFB133Q30KQ1 61 aa-0.03□□□□□ -2.41
CD44-239ENST00000639002 MT1LQ93083 61 aa-0.03□□□□□ -2.41
CD44-239ENST00000639002 H3BSH0 61 aa-0.04□□□□□ -2.42
CD44-239ENST00000639002 MT1FP04733 61 aa-0.05□□□□□ -2.42
CD44-239ENST00000639002 MT1XP80297 61 aa-0.05□□□□□ -2.42
CD44-239ENST00000639002 TMEM167AQ8TBQ9 72 aa-0.05□□□□□ -2.42
CD44-239ENST00000639002 DEFB4AO15263 64 aa-0.06□□□□□ -2.42
CD44-239ENST00000639002 MT2AP02795 61 aa-0.06□□□□□ -2.42
CD44-239ENST00000639002 MT1HL1P0DM35 61 aa-0.06□□□□□ -2.42
CD44-239ENST00000639002 CD52P31358 61 aa-0.07□□□□□ -2.42
CD44-239ENST00000639002 STATHP02808 62 aa-0.08□□□□□ -2.42
CD44-239ENST00000639002 MT1BP07438 61 aa-0.08□□□□□ -2.42
CD44-239ENST00000639002 MT1GP13640 62 aa-0.08□□□□□ -2.42
CD44-239ENST00000639002 RPS29P62273 56 aaKnown RBP-0.09□□□□□ -2.42
CD44-239ENST00000639002 MT1MQ8N339 61 aa-0.09□□□□□ -2.42
CD44-239ENST00000639002 KRTAP19-2Q3LHN2 52 aa-0.11□□□□□ -2.43
CD44-239ENST00000639002 HTN3P15516 51 aa-0.12□□□□□ -2.43
CD44-239ENST00000639002 RPL39P5Q59GN2 51 aa-0.12□□□□□ -2.43
CD44-239ENST00000639002 DEFB108AA8MXU0 73 aa-0.15□□□□□ -2.43
CD44-239ENST00000639002 APELAP0DMC3 54 aa-0.15□□□□□ -2.43
CD44-239ENST00000639002 A0A096LPF7 62 aa-0.18□□□□□ -2.44
CD44-239ENST00000639002 LINC01556Q5JQF7 62 aa-0.18□□□□□ -2.44
CD44-239ENST00000639002 DEFB108BQ8NET1 73 aa-0.21□□□□□ -2.44
CD44-239ENST00000639002 Q9Y3F1 56 aa-0.21□□□□□ -2.44
CD44-239ENST00000639002 COX14Q96I36 57 aa-0.26□□□□□ -2.45
Retrieved 77 of 20,778 RNA–protein pairs in 11.5 ms