RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 MT1LQ93083 61 aa6.78□□□□□ -1.32
CLN3-258ENST00000637184 KRTAP19-3Q7Z4W3 81 aa6.73□□□□□ -1.33
CLN3-258ENST00000637184 MDN1Q9NU22 5596 aa6.72□□□□□ -1.33
CLN3-258ENST00000637184 SPRR2EP22531 72 aa6.67□□□□□ -1.34
CLN3-258ENST00000637184 SPRR2BP35325 72 aa6.67□□□□□ -1.34
CLN3-258ENST00000637184 SPRR2AP35326 72 aa6.67□□□□□ -1.34
CLN3-258ENST00000637184 KRTAP19-4Q3LI73 84 aa6.67□□□□□ -1.34
CLN3-258ENST00000637184 LCE1AQ5T7P2 110 aa6.67□□□□□ -1.34
CLN3-258ENST00000637184 MT1GP13640 62 aa6.65□□□□□ -1.34
CLN3-258ENST00000637184 LCE5AQ5TCM9 118 aa6.62□□□□□ -1.35
CLN3-258ENST00000637184 LCE3CQ5T5A8 94 aa6.6□□□□□ -1.35
CLN3-258ENST00000637184 MT1MQ8N339 61 aa6.56□□□□□ -1.36
CLN3-258ENST00000637184 KRTAP4-7Q9BYR0 210 aa6.54□□□□□ -1.36
CLN3-258ENST00000637184 NEBP20929 6669 aa6.48□□□□□ -1.37
CLN3-258ENST00000637184 SPRR2DP22532 72 aa6.42□□□□□ -1.38
CLN3-258ENST00000637184 KRTAP4-3Q9BYR4 195 aa6.41□□□□□ -1.38
CLN3-258ENST00000637184 SPRR5A0A1B0GTR4 108 aa6.39□□□□□ -1.39
CLN3-258ENST00000637184 DSTQ03001 7570 aaKnown RBP6.31□□□□□ -1.4
CLN3-258ENST00000637184 KRTAP9-6A8MVA2 160 aa6.21□□□□□ -1.41
CLN3-258ENST00000637184 LCE3BQ5TA77 95 aa6.18□□□□□ -1.42
CLN3-258ENST00000637184 LOC100996750A0A140TA64 210 aa6.15□□□□□ -1.43
CLN3-258ENST00000637184 LUZP6Q538Z0 58 aa6.13□□□□□ -1.43
CLN3-258ENST00000637184 KRTAP2-3P0C7H8 128 aa6.08□□□□□ -1.44
CLN3-258ENST00000637184 KRTAP2-4Q9BYR9 128 aa6.08□□□□□ -1.44
CLN3-258ENST00000637184 NDUFAF8A1L188 74 aa6.03□□□□□ -1.44
CLN3-258ENST00000637184 H3BS24 57 aa6.02□□□□□ -1.45
CLN3-258ENST00000637184 KRTAP20-1Q3LI63 56 aa6.02□□□□□ -1.45
CLN3-258ENST00000637184 KRTAP2-2Q9BYT5 123 aa5.94□□□□□ -1.46
CLN3-258ENST00000637184 KRTAP2-1Q9BYU5 128 aa5.94□□□□□ -1.46
CLN3-258ENST00000637184 KRTAP5-5Q701N2 237 aaPredicted RBP5.93□□□□□ -1.46
CLN3-258ENST00000637184 MT1AP04731 61 aa5.77□□□□□ -1.49
CLN3-258ENST00000637184 KRTAP5-4Q6L8H1 288 aa5.75□□□□□ -1.49
CLN3-258ENST00000637184 KRTAP6-1Q3LI64 71 aa5.72□□□□□ -1.49
CLN3-258ENST00000637184 LCE4AQ5TA78 99 aa5.7□□□□□ -1.5
CLN3-258ENST00000637184 SYNE1Q8NF91 8797 aaKnown RBP5.59□□□□□ -1.51
CLN3-258ENST00000637184 KRTAP12-4P60329 112 aa5.58□□□□□ -1.52
CLN3-258ENST00000637184 MT4P47944 62 aa5.57□□□□□ -1.52
CLN3-258ENST00000637184 KRTAP4-9Q9BYQ8 210 aa5.56□□□□□ -1.52
CLN3-258ENST00000637184 LCE1DQ5T752 114 aa5.5□□□□□ -1.53
CLN3-258ENST00000637184 KRTAP9-4Q9BYQ2 154 aa5.5□□□□□ -1.53
CLN3-258ENST00000637184 KRTAP4-6Q9BYQ5 205 aa5.5□□□□□ -1.53
CLN3-258ENST00000637184 HMCN1Q96RW7 5635 aa5.44□□□□□ -1.54
CLN3-258ENST00000637184 A0A0A0MQY5 61 aa5.39□□□□□ -1.55
CLN3-258ENST00000637184 KRTAP20-2Q3LI61 65 aa5.39□□□□□ -1.55
CLN3-258ENST00000637184 KRTAP6-2Q3LI66 62 aa5.29□□□□□ -1.56
CLN3-258ENST00000637184 MT3P25713 68 aa5.25□□□□□ -1.57
CLN3-258ENST00000637184 KRTAP5-3Q6L8H2 238 aa5.19□□□□□ -1.58
CLN3-258ENST00000637184 KRTAP5-2Q701N4 177 aa5.17□□□□□ -1.58
CLN3-258ENST00000637184 GPR98Q8WXG9 6306 aa5.01□□□□□ -1.61
CLN3-258ENST00000637184 INE1O15225 51 aa5□□□□□ -1.61
CLN3-258ENST00000637184 LCE3DQ9BYE3 92 aa4.93□□□□□ -1.62
CLN3-258ENST00000637184 AHNAK2Q8IVF2 5795 aa4.91□□□□□ -1.62
CLN3-258ENST00000637184 OBSCNQ5VST9 7968 aa4.86□□□□□ -1.63
CLN3-258ENST00000637184 LCE3EQ5T5B0 92 aa4.78□□□□□ -1.64
CLN3-258ENST00000637184 KRTAP4-11Q9BYQ6 195 aa4.72□□□□□ -1.65
CLN3-258ENST00000637184 KRTAP5-10Q6L8G5 202 aa4.66□□□□□ -1.66
CLN3-258ENST00000637184 LCE1EQ5T753 118 aa4.6□□□□□ -1.67
CLN3-258ENST00000637184 KRTAP5-8O75690 187 aa4.53□□□□□ -1.68
CLN3-258ENST00000637184 KRTAP5-1Q6L8H4 278 aa4.5□□□□□ -1.69
CLN3-258ENST00000637184 KRTAP5-7Q6L8G8 165 aa4.47□□□□□ -1.69
CLN3-258ENST00000637184 MUC5ACP98088 5654 aa4.36□□□□□ -1.71
CLN3-258ENST00000637184 LCE1BQ5T7P3 118 aa4.32□□□□□ -1.72
CLN3-258ENST00000637184 LCE1CQ5T751 118 aa4.28□□□□□ -1.72
CLN3-258ENST00000637184 KRTAP4-2Q9BYR5 136 aa4.28□□□□□ -1.72
CLN3-258ENST00000637184 KRTAP9-9Q9BYP9 154 aa4.16□□□□□ -1.74
CLN3-258ENST00000637184 PRM1P04553 51 aa4.07□□□□□ -1.76
CLN3-258ENST00000637184 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.98□□□□□ -1.77
CLN3-258ENST00000637184 MUC5BQ9HC84 5762 aaPredicted RBP3.95□□□□□ -1.78
CLN3-258ENST00000637184 AHNAKQ09666 5890 aaKnown RBP3.82□□□□□ -1.8
CLN3-258ENST00000637184 KRTAP5-11Q6L8G4 156 aa3.79□□□□□ -1.8
CLN3-258ENST00000637184 KRTAP21-2Q3LI59 83 aa3.74□□□□□ -1.81
CLN3-258ENST00000637184 KRTAP4-12Q9BQ66 201 aa3.61□□□□□ -1.83
CLN3-258ENST00000637184 LCE1FQ5T754 118 aa3.48□□□□□ -1.85
CLN3-258ENST00000637184 KRTAP4-4Q9BYR3 166 aa3.35□□□□□ -1.87
CLN3-258ENST00000637184 PHGR1C9JFL3 82 aa3.25□□□□□ -1.89
CLN3-258ENST00000637184 MUC19Q7Z5P9 8384 aa2.91□□□□□ -1.94
CLN3-258ENST00000637184 KRTAP21-1Q3LI58 79 aa2.44□□□□□ -2.02
CLN3-258ENST00000637184 MUC16Q8WXI7 14507 aa2.1□□□□□ -2.07
Retrieved 78 of 20,778 RNA–protein pairs in 12.8 ms