RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 MUC12Q9UKN1 5478 aa5.41□□□□□ -1.54
CLN3-242ENST00000635958 KRTAP5-9P26371 169 aa5.34□□□□□ -1.55
CLN3-242ENST00000635958 MDN1Q9NU22 5596 aa5.29□□□□□ -1.56
CLN3-242ENST00000635958 KRTAP19-7Q3SYF9 63 aa5.26□□□□□ -1.57
CLN3-242ENST00000635958 KRTAP19-5Q3LI72 72 aa5.25□□□□□ -1.57
CLN3-242ENST00000635958 KRTAP12-3P60328 96 aa5.23□□□□□ -1.57
CLN3-242ENST00000635958 INE1O15225 51 aa5.2□□□□□ -1.58
CLN3-242ENST00000635958 GPR98Q8WXG9 6306 aa5.18□□□□□ -1.58
CLN3-242ENST00000635958 MT1EP04732 61 aa5.17□□□□□ -1.58
CLN3-242ENST00000635958 SPRR2FQ96RM1 72 aa5.17□□□□□ -1.58
CLN3-242ENST00000635958 KRTAP2-3P0C7H8 128 aa5.16□□□□□ -1.58
CLN3-242ENST00000635958 KRTAP2-4Q9BYR9 128 aa5.16□□□□□ -1.58
CLN3-242ENST00000635958 SPRR2EP22531 72 aa5.09□□□□□ -1.6
CLN3-242ENST00000635958 SPRR2BP35325 72 aa5.09□□□□□ -1.6
CLN3-242ENST00000635958 SPRR2AP35326 72 aa5.09□□□□□ -1.6
CLN3-242ENST00000635958 MT1LQ93083 61 aa5.04□□□□□ -1.6
CLN3-242ENST00000635958 LCE1AQ5T7P2 110 aa5.03□□□□□ -1.6
CLN3-242ENST00000635958 KRTAP19-4Q3LI73 84 aa5.02□□□□□ -1.61
CLN3-242ENST00000635958 KRTAP19-3Q7Z4W3 81 aa5.01□□□□□ -1.61
CLN3-242ENST00000635958 MT1GP13640 62 aa4.97□□□□□ -1.61
CLN3-242ENST00000635958 LCE5AQ5TCM9 118 aa4.96□□□□□ -1.62
CLN3-242ENST00000635958 LCE3CQ5T5A8 94 aa4.95□□□□□ -1.62
CLN3-242ENST00000635958 KRTAP2-2Q9BYT5 123 aa4.94□□□□□ -1.62
CLN3-242ENST00000635958 KRTAP2-1Q9BYU5 128 aa4.94□□□□□ -1.62
CLN3-242ENST00000635958 SPRR2DP22532 72 aa4.92□□□□□ -1.62
CLN3-242ENST00000635958 MT1MQ8N339 61 aa4.88□□□□□ -1.63
CLN3-242ENST00000635958 KRTAP4-7Q9BYR0 210 aa4.82□□□□□ -1.64
CLN3-242ENST00000635958 LCE3BQ5TA77 95 aa4.79□□□□□ -1.64
CLN3-242ENST00000635958 KRTAP4-3Q9BYR4 195 aa4.74□□□□□ -1.65
CLN3-242ENST00000635958 DSTQ03001 7570 aaKnown RBP4.64□□□□□ -1.67
CLN3-242ENST00000635958 KRTAP9-6A8MVA2 160 aa4.6□□□□□ -1.67
CLN3-242ENST00000635958 LOC100996750A0A140TA64 210 aa4.53□□□□□ -1.68
CLN3-242ENST00000635958 KRTAP4-9Q9BYQ8 210 aa4.45□□□□□ -1.7
CLN3-242ENST00000635958 KRTAP5-5Q701N2 237 aaPredicted RBP4.44□□□□□ -1.7
CLN3-242ENST00000635958 AHNAK2Q8IVF2 5795 aa4.41□□□□□ -1.7
CLN3-242ENST00000635958 HMCN1Q96RW7 5635 aa4.38□□□□□ -1.71
CLN3-242ENST00000635958 LCE1DQ5T752 114 aa4.36□□□□□ -1.71
CLN3-242ENST00000635958 KRTAP5-10Q6L8G5 202 aa4.35□□□□□ -1.71
CLN3-242ENST00000635958 LCE4AQ5TA78 99 aa4.35□□□□□ -1.71
CLN3-242ENST00000635958 KRTAP5-4Q6L8H1 288 aa4.34□□□□□ -1.71
CLN3-242ENST00000635958 MT4P47944 62 aa4.3□□□□□ -1.72
CLN3-242ENST00000635958 KRTAP5-7Q6L8G8 165 aa4.3□□□□□ -1.72
CLN3-242ENST00000635958 MT1AP04731 61 aa4.29□□□□□ -1.72
CLN3-242ENST00000635958 KRTAP6-1Q3LI64 71 aa4.23□□□□□ -1.73
CLN3-242ENST00000635958 KRTAP4-6Q9BYQ5 205 aa4.18□□□□□ -1.74
CLN3-242ENST00000635958 SYNE1Q8NF91 8797 aaKnown RBP4.17□□□□□ -1.74
CLN3-242ENST00000635958 KRTAP12-4P60329 112 aa4.15□□□□□ -1.75
CLN3-242ENST00000635958 KRTAP9-4Q9BYQ2 154 aa4.1□□□□□ -1.75
CLN3-242ENST00000635958 KRTAP5-3Q6L8H2 238 aa4.06□□□□□ -1.76
CLN3-242ENST00000635958 KRTAP20-2Q3LI61 65 aa4.04□□□□□ -1.76
CLN3-242ENST00000635958 AHNAKQ09666 5890 aaKnown RBP3.96□□□□□ -1.78
CLN3-242ENST00000635958 KRTAP6-2Q3LI66 62 aa3.93□□□□□ -1.78
CLN3-242ENST00000635958 KRTAP5-2Q701N4 177 aa3.91□□□□□ -1.78
CLN3-242ENST00000635958 MT3P25713 68 aa3.9□□□□□ -1.79
CLN3-242ENST00000635958 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.8
CLN3-242ENST00000635958 LCE3EQ5T5B0 92 aa3.81□□□□□ -1.8
CLN3-242ENST00000635958 MUC5ACP98088 5654 aa3.8□□□□□ -1.8
CLN3-242ENST00000635958 MUC5BQ9HC84 5762 aaPredicted RBP3.78□□□□□ -1.8
CLN3-242ENST00000635958 KRTAP4-11Q9BYQ6 195 aa3.68□□□□□ -1.82
CLN3-242ENST00000635958 OBSCNQ5VST9 7968 aa3.58□□□□□ -1.84
CLN3-242ENST00000635958 PRM1P04553 51 aa3.58□□□□□ -1.84
CLN3-242ENST00000635958 KRTAP5-8O75690 187 aa3.56□□□□□ -1.84
CLN3-242ENST00000635958 LCE1EQ5T753 118 aa3.47□□□□□ -1.85
CLN3-242ENST00000635958 KRTAP5-1Q6L8H4 278 aa3.4□□□□□ -1.87
CLN3-242ENST00000635958 KRTAP9-9Q9BYP9 154 aa3.37□□□□□ -1.87
CLN3-242ENST00000635958 LCE1CQ5T751 118 aa3.21□□□□□ -1.89
CLN3-242ENST00000635958 LCE1BQ5T7P3 118 aa3.21□□□□□ -1.89
CLN3-242ENST00000635958 KRTAP4-2Q9BYR5 136 aa3.21□□□□□ -1.89
CLN3-242ENST00000635958 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.01□□□□□ -1.93
CLN3-242ENST00000635958 KRTAP5-11Q6L8G4 156 aa2.85□□□□□ -1.95
CLN3-242ENST00000635958 KRTAP21-2Q3LI59 83 aa2.79□□□□□ -1.96
CLN3-242ENST00000635958 KRTAP4-12Q9BQ66 201 aa2.75□□□□□ -1.97
CLN3-242ENST00000635958 LCE1FQ5T754 118 aa2.64□□□□□ -1.99
CLN3-242ENST00000635958 PHGR1C9JFL3 82 aa2.56□□□□□ -2
CLN3-242ENST00000635958 KRTAP4-4Q9BYR3 166 aa2.45□□□□□ -2.02
CLN3-242ENST00000635958 KRTAP21-1Q3LI58 79 aa2.35□□□□□ -2.03
CLN3-242ENST00000635958 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
CLN3-242ENST00000635958 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 22 ms