RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 KRTAP9-6A8MVA2 160 aa3.74□□□□□ -1.81
CUX1-221ENST00000622516 MT1LQ93083 61 aa3.72□□□□□ -1.81
CUX1-221ENST00000622516 KRTAP4-3Q9BYR4 195 aa3.63□□□□□ -1.83
CUX1-221ENST00000622516 MDN1Q9NU22 5596 aa3.61□□□□□ -1.83
CUX1-221ENST00000622516 LOC100996750A0A140TA64 210 aa3.58□□□□□ -1.84
CUX1-221ENST00000622516 SPRR2FQ96RM1 72 aa3.56□□□□□ -1.84
CUX1-221ENST00000622516 KRTAP9-2Q9BYQ4 174 aa3.53□□□□□ -1.84
CUX1-221ENST00000622516 MT1GP13640 62 aa3.53□□□□□ -1.84
CUX1-221ENST00000622516 KRTAP19-3Q7Z4W3 81 aa3.53□□□□□ -1.84
CUX1-221ENST00000622516 SYNE1Q8NF91 8797 aaKnown RBP3.53□□□□□ -1.85
CUX1-221ENST00000622516 CRCT1Q9UGL9 99 aa3.52□□□□□ -1.85
CUX1-221ENST00000622516 MT1MQ8N339 61 aa3.51□□□□□ -1.85
CUX1-221ENST00000622516 KRTAP19-4Q3LI73 84 aa3.48□□□□□ -1.85
CUX1-221ENST00000622516 KRTAP2-2Q9BYT5 123 aa3.46□□□□□ -1.86
CUX1-221ENST00000622516 OBSCNQ5VST9 7968 aa3.46□□□□□ -1.86
CUX1-221ENST00000622516 LCE5AQ5TCM9 118 aa3.44□□□□□ -1.86
CUX1-221ENST00000622516 KRTAP2-3P0C7H8 128 aa3.44□□□□□ -1.86
CUX1-221ENST00000622516 KRTAP2-4Q9BYR9 128 aa3.44□□□□□ -1.86
CUX1-221ENST00000622516 KRTAP2-1Q9BYU5 128 aa3.44□□□□□ -1.86
CUX1-221ENST00000622516 LCE1FQ5T754 118 aa3.32□□□□□ -1.88
CUX1-221ENST00000622516 LCE1AQ5T7P2 110 aa3.3□□□□□ -1.88
CUX1-221ENST00000622516 KRTAP5-9P26371 169 aa3.27□□□□□ -1.89
CUX1-221ENST00000622516 LCE4AQ5TA78 99 aa3.27□□□□□ -1.89
CUX1-221ENST00000622516 SPRR2EP22531 72 aa3.26□□□□□ -1.89
CUX1-221ENST00000622516 SPRR2BP35325 72 aa3.26□□□□□ -1.89
CUX1-221ENST00000622516 SPRR2AP35326 72 aa3.26□□□□□ -1.89
CUX1-221ENST00000622516 LCE1EQ5T753 118 aa3.24□□□□□ -1.89
CUX1-221ENST00000622516 KRTAP9-6A0A140TA67 174 aa3.24□□□□□ -1.89
CUX1-221ENST00000622516 LCE3BQ5TA77 95 aa3.22□□□□□ -1.89
CUX1-221ENST00000622516 KRTAP9-4Q9BYQ2 154 aa3.22□□□□□ -1.89
CUX1-221ENST00000622516 KRTAP6-1Q3LI64 71 aa3.18□□□□□ -1.9
CUX1-221ENST00000622516 KRTAP9-9Q9BYP9 154 aa3.17□□□□□ -1.9
CUX1-221ENST00000622516 KRTAP4-9Q9BYQ8 210 aa3.17□□□□□ -1.9
CUX1-221ENST00000622516 KRTAP9-7A8MTY7 169 aa3.15□□□□□ -1.9
CUX1-221ENST00000622516 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.15□□□□□ -1.9
CUX1-221ENST00000622516 KRTAP6-3Q3LI67 103 aa3.12□□□□□ -1.91
CUX1-221ENST00000622516 SPRR2DP22532 72 aa3.12□□□□□ -1.91
CUX1-221ENST00000622516 MT1AP04731 61 aa3.09□□□□□ -1.91
CUX1-221ENST00000622516 KRTAP12-4P60329 112 aa3.09□□□□□ -1.91
CUX1-221ENST00000622516 KRTAP5-5Q701N2 237 aaPredicted RBP3.09□□□□□ -1.91
CUX1-221ENST00000622516 LCE1DQ5T752 114 aa3.09□□□□□ -1.92
CUX1-221ENST00000622516 KRTAP4-6Q9BYQ5 205 aa3.03□□□□□ -1.92
CUX1-221ENST00000622516 NEBP20929 6669 aa2.99□□□□□ -1.93
CUX1-221ENST00000622516 LCE3EQ5T5B0 92 aa2.95□□□□□ -1.94
CUX1-221ENST00000622516 LCE3DQ9BYE3 92 aa2.93□□□□□ -1.94
CUX1-221ENST00000622516 KRTAP6-2Q3LI66 62 aa2.9□□□□□ -1.95
CUX1-221ENST00000622516 KRTAP4-12Q9BQ66 201 aa2.82□□□□□ -1.96
CUX1-221ENST00000622516 MT4P47944 62 aa2.81□□□□□ -1.96
CUX1-221ENST00000622516 PRM1P04553 51 aa2.79□□□□□ -1.96
CUX1-221ENST00000622516 MT3P25713 68 aa2.79□□□□□ -1.96
CUX1-221ENST00000622516 KRTAP5-4Q6L8H1 288 aa2.78□□□□□ -1.96
CUX1-221ENST00000622516 HMCN1Q96RW7 5635 aa2.75□□□□□ -1.97
CUX1-221ENST00000622516 KRTAP20-2Q3LI61 65 aa2.66□□□□□ -1.98
CUX1-221ENST00000622516 KRTAP5-2Q701N4 177 aa2.56□□□□□ -2
CUX1-221ENST00000622516 KRTAP20-1Q3LI63 56 aa2.54□□□□□ -2
CUX1-221ENST00000622516 KRTAP5-3Q6L8H2 238 aa2.52□□□□□ -2.01
CUX1-221ENST00000622516 KRTAP4-2Q9BYR5 136 aa2.44□□□□□ -2.02
CUX1-221ENST00000622516 KRTAP4-11Q9BYQ6 195 aa2.43□□□□□ -2.02
CUX1-221ENST00000622516 MUC5ACP98088 5654 aa2.43□□□□□ -2.02
CUX1-221ENST00000622516 MUC19Q7Z5P9 8384 aa2.38□□□□□ -2.03
CUX1-221ENST00000622516 LCE1BQ5T7P3 118 aa2.37□□□□□ -2.03
CUX1-221ENST00000622516 GPR98Q8WXG9 6306 aa2.29□□□□□ -2.04
CUX1-221ENST00000622516 KRTAP5-1Q6L8H4 278 aa2.24□□□□□ -2.05
CUX1-221ENST00000622516 AHNAK2Q8IVF2 5795 aa2.24□□□□□ -2.05
CUX1-221ENST00000622516 MUC5BQ9HC84 5762 aaPredicted RBP2.19□□□□□ -2.06
CUX1-221ENST00000622516 KRTAP5-10Q6L8G5 202 aa2.18□□□□□ -2.06
CUX1-221ENST00000622516 LCE1CQ5T751 118 aa2.17□□□□□ -2.06
CUX1-221ENST00000622516 KRTAP5-8O75690 187 aa2.15□□□□□ -2.07
CUX1-221ENST00000622516 KRTAP21-2Q3LI59 83 aa2.04□□□□□ -2.08
CUX1-221ENST00000622516 KRTAP4-4Q9BYR3 166 aa2.02□□□□□ -2.09
CUX1-221ENST00000622516 KRTAP5-7Q6L8G8 165 aa2.01□□□□□ -2.09
CUX1-221ENST00000622516 KRTAP5-6Q6L8G9 129 aaPredicted RBP2□□□□□ -2.09
CUX1-221ENST00000622516 KRTAP5-11Q6L8G4 156 aa1.87□□□□□ -2.11
CUX1-221ENST00000622516 KRTAP21-1Q3LI58 79 aa1.84□□□□□ -2.12
CUX1-221ENST00000622516 AHNAKQ09666 5890 aaKnown RBP1.81□□□□□ -2.12
CUX1-221ENST00000622516 PHGR1C9JFL3 82 aa1.64□□□□□ -2.15
CUX1-221ENST00000622516 MUC16Q8WXI7 14507 aa1.02□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 53.1 ms