RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 KRTAP9-6A8MVA2 160 aa5.1□□□□□ -1.59
SHROOM1-208ENST00000617339 SYNE2Q8WXH0 6885 aaKnown RBP5.08□□□□□ -1.6
SHROOM1-208ENST00000617339 KRTAP9-2Q9BYQ4 174 aa5.08□□□□□ -1.6
SHROOM1-208ENST00000617339 MACF1Q9UPN3 7388 aaKnown RBP5.07□□□□□ -1.6
SHROOM1-208ENST00000617339 KRTAP4-3Q9BYR4 195 aa5.05□□□□□ -1.6
SHROOM1-208ENST00000617339 KRTAP19-6Q3LI70 58 aa4.99□□□□□ -1.61
SHROOM1-208ENST00000617339 MT1EP04732 61 aa4.99□□□□□ -1.61
SHROOM1-208ENST00000617339 LOC100996750A0A140TA64 210 aa4.97□□□□□ -1.61
SHROOM1-208ENST00000617339 MT1LQ93083 61 aa4.97□□□□□ -1.61
SHROOM1-208ENST00000617339 MT1GP13640 62 aa4.89□□□□□ -1.63
SHROOM1-208ENST00000617339 KRTAP2-3P0C7H8 128 aa4.87□□□□□ -1.63
SHROOM1-208ENST00000617339 KRTAP2-4Q9BYR9 128 aa4.87□□□□□ -1.63
SHROOM1-208ENST00000617339 KRTAP2-1Q9BYU5 128 aa4.87□□□□□ -1.63
SHROOM1-208ENST00000617339 MDN1Q9NU22 5596 aa4.87□□□□□ -1.63
SHROOM1-208ENST00000617339 SPRR2EP22531 72 aa4.79□□□□□ -1.64
SHROOM1-208ENST00000617339 SPRR2BP35325 72 aa4.79□□□□□ -1.64
SHROOM1-208ENST00000617339 SPRR2AP35326 72 aa4.79□□□□□ -1.64
SHROOM1-208ENST00000617339 KRTAP19-3Q7Z4W3 81 aa4.74□□□□□ -1.65
SHROOM1-208ENST00000617339 MT1MQ8N339 61 aa4.7□□□□□ -1.66
SHROOM1-208ENST00000617339 KRTAP12-4P60329 112 aa4.68□□□□□ -1.66
SHROOM1-208ENST00000617339 LCE3BQ5TA77 95 aa4.59□□□□□ -1.67
SHROOM1-208ENST00000617339 KRTAP9-6A0A140TA67 174 aa4.57□□□□□ -1.68
SHROOM1-208ENST00000617339 SPRR2DP22532 72 aa4.57□□□□□ -1.68
SHROOM1-208ENST00000617339 LCE5AQ5TCM9 118 aa4.51□□□□□ -1.69
SHROOM1-208ENST00000617339 KRTAP4-9Q9BYQ8 210 aa4.48□□□□□ -1.69
SHROOM1-208ENST00000617339 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.45□□□□□ -1.7
SHROOM1-208ENST00000617339 LCE1AQ5T7P2 110 aa4.41□□□□□ -1.7
SHROOM1-208ENST00000617339 KRTAP19-4Q3LI73 84 aa4.39□□□□□ -1.71
SHROOM1-208ENST00000617339 KRTAP6-1Q3LI64 71 aa4.32□□□□□ -1.72
SHROOM1-208ENST00000617339 KRTAP9-7A8MTY7 169 aa4.32□□□□□ -1.72
SHROOM1-208ENST00000617339 KRTAP4-6Q9BYQ5 205 aa4.29□□□□□ -1.72
SHROOM1-208ENST00000617339 MT4P47944 62 aa4.24□□□□□ -1.73
SHROOM1-208ENST00000617339 KRTAP6-3Q3LI67 103 aa4.21□□□□□ -1.73
SHROOM1-208ENST00000617339 PRM1P04553 51 aa4.19□□□□□ -1.74
SHROOM1-208ENST00000617339 KRTAP5-9P26371 169 aa4.19□□□□□ -1.74
SHROOM1-208ENST00000617339 LCE3DQ9BYE3 92 aa4.1□□□□□ -1.75
SHROOM1-208ENST00000617339 MT1AP04731 61 aa4.09□□□□□ -1.75
SHROOM1-208ENST00000617339 LCE3EQ5T5B0 92 aa4.06□□□□□ -1.76
SHROOM1-208ENST00000617339 KRTAP5-5Q701N2 237 aaPredicted RBP4.02□□□□□ -1.77
SHROOM1-208ENST00000617339 KRTAP6-2Q3LI66 62 aa3.97□□□□□ -1.77
SHROOM1-208ENST00000617339 NEBP20929 6669 aa3.94□□□□□ -1.78
SHROOM1-208ENST00000617339 MT3P25713 68 aa3.89□□□□□ -1.79
SHROOM1-208ENST00000617339 KRTAP9-4Q9BYQ2 154 aa3.89□□□□□ -1.79
SHROOM1-208ENST00000617339 KRTAP20-1Q3LI63 56 aa3.84□□□□□ -1.79
SHROOM1-208ENST00000617339 KRTAP4-12Q9BQ66 201 aa3.78□□□□□ -1.8
SHROOM1-208ENST00000617339 KRTAP2-2Q9BYT5 123 aa3.76□□□□□ -1.81
SHROOM1-208ENST00000617339 LCE1DQ5T752 114 aa3.74□□□□□ -1.81
SHROOM1-208ENST00000617339 MUC19Q7Z5P9 8384 aa3.72□□□□□ -1.81
SHROOM1-208ENST00000617339 HMCN1Q96RW7 5635 aa3.69□□□□□ -1.82
SHROOM1-208ENST00000617339 LCE1BQ5T7P3 118 aa3.67□□□□□ -1.82
SHROOM1-208ENST00000617339 LCE1EQ5T753 118 aa3.65□□□□□ -1.82
SHROOM1-208ENST00000617339 LCE4AQ5TA78 99 aa3.61□□□□□ -1.83
SHROOM1-208ENST00000617339 KRTAP9-9Q9BYP9 154 aa3.61□□□□□ -1.83
SHROOM1-208ENST00000617339 KRTAP20-2Q3LI61 65 aa3.55□□□□□ -1.84
SHROOM1-208ENST00000617339 KRTAP5-4Q6L8H1 288 aa3.52□□□□□ -1.85
SHROOM1-208ENST00000617339 MUC5ACP98088 5654 aa3.44□□□□□ -1.86
SHROOM1-208ENST00000617339 KRTAP4-11Q9BYQ6 195 aa3.33□□□□□ -1.88
SHROOM1-208ENST00000617339 KRTAP4-2Q9BYR5 136 aa3.27□□□□□ -1.89
SHROOM1-208ENST00000617339 LCE1FQ5T754 118 aa3.26□□□□□ -1.89
SHROOM1-208ENST00000617339 GPR98Q8WXG9 6306 aa3.24□□□□□ -1.89
SHROOM1-208ENST00000617339 KRTAP5-3Q6L8H2 238 aa3.23□□□□□ -1.89
SHROOM1-208ENST00000617339 KRTAP5-2Q701N4 177 aa3.23□□□□□ -1.89
SHROOM1-208ENST00000617339 AHNAK2Q8IVF2 5795 aa3.08□□□□□ -1.92
SHROOM1-208ENST00000617339 MUC5BQ9HC84 5762 aaPredicted RBP2.98□□□□□ -1.93
SHROOM1-208ENST00000617339 KRTAP4-4Q9BYR3 166 aa2.94□□□□□ -1.94
SHROOM1-208ENST00000617339 KRTAP5-1Q6L8H4 278 aa2.9□□□□□ -1.94
SHROOM1-208ENST00000617339 KRTAP5-10Q6L8G5 202 aa2.86□□□□□ -1.95
SHROOM1-208ENST00000617339 KRTAP5-8O75690 187 aa2.86□□□□□ -1.95
SHROOM1-208ENST00000617339 LCE1CQ5T751 118 aa2.79□□□□□ -1.96
SHROOM1-208ENST00000617339 KRTAP21-2Q3LI59 83 aa2.67□□□□□ -1.98
SHROOM1-208ENST00000617339 AHNAKQ09666 5890 aaKnown RBP2.51□□□□□ -2.01
SHROOM1-208ENST00000617339 KRTAP21-1Q3LI58 79 aa2.48□□□□□ -2.01
SHROOM1-208ENST00000617339 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.45□□□□□ -2.02
SHROOM1-208ENST00000617339 KRTAP5-7Q6L8G8 165 aa2.43□□□□□ -2.02
SHROOM1-208ENST00000617339 KRTAP5-11Q6L8G4 156 aa2.38□□□□□ -2.03
SHROOM1-208ENST00000617339 PHGR1C9JFL3 82 aa2.11□□□□□ -2.07
SHROOM1-208ENST00000617339 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
Retrieved 77 of 20,778 RNA–protein pairs in 118.9 ms