RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 MT1LQ93083 61 aa5.43□□□□□ -1.54
TRIM28-209ENST00000597423 KRTAP19-3Q7Z4W3 81 aa5.41□□□□□ -1.54
TRIM28-209ENST00000597423 MT1GP13640 62 aa5.4□□□□□ -1.54
TRIM28-209ENST00000597423 SPRR2EP22531 72 aa5.39□□□□□ -1.55
TRIM28-209ENST00000597423 SPRR2BP35325 72 aa5.39□□□□□ -1.55
TRIM28-209ENST00000597423 SPRR2AP35326 72 aa5.39□□□□□ -1.55
TRIM28-209ENST00000597423 MUC12Q9UKN1 5478 aa5.37□□□□□ -1.55
TRIM28-209ENST00000597423 LCE1AQ5T7P2 110 aa5.37□□□□□ -1.55
TRIM28-209ENST00000597423 LCE5AQ5TCM9 118 aa5.33□□□□□ -1.56
TRIM28-209ENST00000597423 MDN1Q9NU22 5596 aa5.31□□□□□ -1.56
TRIM28-209ENST00000597423 LCE3CQ5T5A8 94 aa5.3□□□□□ -1.56
TRIM28-209ENST00000597423 MT1MQ8N339 61 aa5.26□□□□□ -1.57
TRIM28-209ENST00000597423 NEBP20929 6669 aa5.25□□□□□ -1.57
TRIM28-209ENST00000597423 SPRR2DP22532 72 aa5.21□□□□□ -1.58
TRIM28-209ENST00000597423 KRTAP4-7Q9BYR0 210 aa5.16□□□□□ -1.58
TRIM28-209ENST00000597423 SPRR5A0A1B0GTR4 108 aa5.07□□□□□ -1.6
TRIM28-209ENST00000597423 KRTAP4-3Q9BYR4 195 aa5.07□□□□□ -1.6
TRIM28-209ENST00000597423 LCE3BQ5TA77 95 aa5.01□□□□□ -1.61
TRIM28-209ENST00000597423 KRTAP2-3P0C7H8 128 aa4.99□□□□□ -1.61
TRIM28-209ENST00000597423 KRTAP2-4Q9BYR9 128 aa4.99□□□□□ -1.61
TRIM28-209ENST00000597423 LUZP6Q538Z0 58 aa4.97□□□□□ -1.61
TRIM28-209ENST00000597423 KRTAP20-1Q3LI63 56 aa4.92□□□□□ -1.62
TRIM28-209ENST00000597423 DSTQ03001 7570 aaKnown RBP4.92□□□□□ -1.62
TRIM28-209ENST00000597423 KRTAP9-6A8MVA2 160 aa4.89□□□□□ -1.63
TRIM28-209ENST00000597423 KRTAP2-2Q9BYT5 123 aa4.87□□□□□ -1.63
TRIM28-209ENST00000597423 KRTAP2-1Q9BYU5 128 aa4.87□□□□□ -1.63
TRIM28-209ENST00000597423 LOC100996750A0A140TA64 210 aa4.86□□□□□ -1.63
TRIM28-209ENST00000597423 KRTAP5-5Q701N2 237 aaPredicted RBP4.73□□□□□ -1.65
TRIM28-209ENST00000597423 LCE4AQ5TA78 99 aa4.65□□□□□ -1.67
TRIM28-209ENST00000597423 MT1AP04731 61 aa4.64□□□□□ -1.67
TRIM28-209ENST00000597423 KRTAP5-4Q6L8H1 288 aa4.63□□□□□ -1.67
TRIM28-209ENST00000597423 NDUFAF8A1L188 74 aa4.59□□□□□ -1.67
TRIM28-209ENST00000597423 KRTAP12-4P60329 112 aa4.57□□□□□ -1.68
TRIM28-209ENST00000597423 KRTAP6-1Q3LI64 71 aa4.55□□□□□ -1.68
TRIM28-209ENST00000597423 MT4P47944 62 aa4.48□□□□□ -1.69
TRIM28-209ENST00000597423 KRTAP4-9Q9BYQ8 210 aa4.46□□□□□ -1.7
TRIM28-209ENST00000597423 KRTAP9-4Q9BYQ2 154 aa4.45□□□□□ -1.7
TRIM28-209ENST00000597423 SYNE1Q8NF91 8797 aaKnown RBP4.43□□□□□ -1.7
TRIM28-209ENST00000597423 LCE1DQ5T752 114 aa4.43□□□□□ -1.7
TRIM28-209ENST00000597423 KRTAP4-6Q9BYQ5 205 aa4.39□□□□□ -1.71
TRIM28-209ENST00000597423 KRTAP20-2Q3LI61 65 aa4.33□□□□□ -1.72
TRIM28-209ENST00000597423 HMCN1Q96RW7 5635 aa4.32□□□□□ -1.72
TRIM28-209ENST00000597423 MT3P25713 68 aa4.27□□□□□ -1.73
TRIM28-209ENST00000597423 KRTAP6-2Q3LI66 62 aa4.24□□□□□ -1.73
TRIM28-209ENST00000597423 GPR98Q8WXG9 6306 aa4.18□□□□□ -1.74
TRIM28-209ENST00000597423 KRTAP5-3Q6L8H2 238 aa4.16□□□□□ -1.74
TRIM28-209ENST00000597423 KRTAP5-2Q701N4 177 aa4.16□□□□□ -1.74
TRIM28-209ENST00000597423 A0A0A0MQY5 61 aa4.1□□□□□ -1.75
TRIM28-209ENST00000597423 LCE3DQ9BYE3 92 aa3.98□□□□□ -1.77
TRIM28-209ENST00000597423 AHNAK2Q8IVF2 5795 aa3.94□□□□□ -1.78
TRIM28-209ENST00000597423 INE1O15225 51 aa3.88□□□□□ -1.79
TRIM28-209ENST00000597423 LCE3EQ5T5B0 92 aa3.85□□□□□ -1.79
TRIM28-209ENST00000597423 KRTAP4-11Q9BYQ6 195 aa3.83□□□□□ -1.8
TRIM28-209ENST00000597423 OBSCNQ5VST9 7968 aa3.79□□□□□ -1.8
TRIM28-209ENST00000597423 KRTAP5-10Q6L8G5 202 aa3.77□□□□□ -1.81
TRIM28-209ENST00000597423 LCE1EQ5T753 118 aa3.76□□□□□ -1.81
TRIM28-209ENST00000597423 H3BS24 57 aa3.67□□□□□ -1.82
TRIM28-209ENST00000597423 KRTAP5-8O75690 187 aa3.64□□□□□ -1.83
TRIM28-209ENST00000597423 KRTAP5-1Q6L8H4 278 aa3.6□□□□□ -1.83
TRIM28-209ENST00000597423 KRTAP5-7Q6L8G8 165 aa3.57□□□□□ -1.84
TRIM28-209ENST00000597423 MUC5ACP98088 5654 aa3.48□□□□□ -1.85
TRIM28-209ENST00000597423 LCE1BQ5T7P3 118 aa3.48□□□□□ -1.85
TRIM28-209ENST00000597423 LCE1CQ5T751 118 aa3.47□□□□□ -1.85
TRIM28-209ENST00000597423 KRTAP9-9Q9BYP9 154 aa3.42□□□□□ -1.86
TRIM28-209ENST00000597423 KRTAP4-2Q9BYR5 136 aa3.41□□□□□ -1.86
TRIM28-209ENST00000597423 PRM1P04553 51 aa3.22□□□□□ -1.89
TRIM28-209ENST00000597423 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.22□□□□□ -1.89
TRIM28-209ENST00000597423 MUC5BQ9HC84 5762 aaPredicted RBP3.18□□□□□ -1.9
TRIM28-209ENST00000597423 AHNAKQ09666 5890 aaKnown RBP3.15□□□□□ -1.9
TRIM28-209ENST00000597423 KRTAP5-11Q6L8G4 156 aa3.06□□□□□ -1.92
TRIM28-209ENST00000597423 KRTAP21-2Q3LI59 83 aa2.98□□□□□ -1.93
TRIM28-209ENST00000597423 LCE1FQ5T754 118 aa2.88□□□□□ -1.95
TRIM28-209ENST00000597423 KRTAP4-12Q9BQ66 201 aa2.88□□□□□ -1.95
TRIM28-209ENST00000597423 KRTAP4-4Q9BYR3 166 aa2.63□□□□□ -1.99
TRIM28-209ENST00000597423 PHGR1C9JFL3 82 aa2.62□□□□□ -1.99
TRIM28-209ENST00000597423 MUC19Q7Z5P9 8384 aa2.24□□□□□ -2.05
TRIM28-209ENST00000597423 KRTAP21-1Q3LI58 79 aa1.93□□□□□ -2.1
TRIM28-209ENST00000597423 MUC16Q8WXI7 14507 aa1.69□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 104.8 ms