RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 KRTAP12-1P59990 96 aa2.78□□□□□ -1.96
SMAD4-208ENST00000589706 RPS29P62273 56 aaKnown RBP2.78□□□□□ -1.96
SMAD4-208ENST00000589706 SPRR5A0A1B0GTR4 108 aa2.77□□□□□ -1.97
SMAD4-208ENST00000589706 R4GN34 69 aa2.77□□□□□ -1.97
SMAD4-208ENST00000589706 M0QZ58 72 aa2.76□□□□□ -1.97
SMAD4-208ENST00000589706 FCGBPQ9Y6R7 5405 aaPredicted RBP2.75□□□□□ -1.97
SMAD4-208ENST00000589706 KRTAP19-2Q3LHN2 52 aa2.74□□□□□ -1.97
SMAD4-208ENST00000589706 M0R2T5 61 aa2.72□□□□□ -1.97
SMAD4-208ENST00000589706 KRTAP6-3Q3LI67 103 aa2.72□□□□□ -1.97
SMAD4-208ENST00000589706 KRTAP20-1Q3LI63 56 aa2.71□□□□□ -1.98
SMAD4-208ENST00000589706 USH2AO75445 5202 aa2.69□□□□□ -1.98
SMAD4-208ENST00000589706 NEBP20929 6669 aa2.68□□□□□ -1.98
SMAD4-208ENST00000589706 LCE3DQ9BYE3 92 aa2.61□□□□□ -1.99
SMAD4-208ENST00000589706 FLGP20930 4061 aaPredicted RBP2.59□□□□□ -1.99
SMAD4-208ENST00000589706 KRTAP19-6Q3LI70 58 aa2.57□□□□□ -2
SMAD4-208ENST00000589706 KRTAP10-10P60014 251 aa2.56□□□□□ -2
SMAD4-208ENST00000589706 C9orf92A6NGG3 77 aa2.54□□□□□ -2
SMAD4-208ENST00000589706 KRTAP2-3P0C7H8 128 aa2.54□□□□□ -2
SMAD4-208ENST00000589706 KRTAP2-4Q9BYR9 128 aa2.54□□□□□ -2
SMAD4-208ENST00000589706 MT2AP02795 61 aa2.51□□□□□ -2.01
SMAD4-208ENST00000589706 MUC12Q9UKN1 5478 aa2.48□□□□□ -2.01
SMAD4-208ENST00000589706 MT1FP04733 61 aa2.48□□□□□ -2.01
SMAD4-208ENST00000589706 TNP1P09430 55 aa2.45□□□□□ -2.02
SMAD4-208ENST00000589706 KRTAP5-1Q6L8H4 278 aa2.45□□□□□ -2.02
SMAD4-208ENST00000589706 KMT2DO14686 5537 aa2.45□□□□□ -2.02
SMAD4-208ENST00000589706 LCE3AQ5TA76 89 aa2.44□□□□□ -2.02
SMAD4-208ENST00000589706 KRTAP2-1Q9BYU5 128 aa2.43□□□□□ -2.02
SMAD4-208ENST00000589706 GPR98Q8WXG9 6306 aa2.43□□□□□ -2.02
SMAD4-208ENST00000589706 KRTAP5-9P26371 169 aa2.42□□□□□ -2.02
SMAD4-208ENST00000589706 KRTAP5-4Q6L8H1 288 aa2.4□□□□□ -2.03
SMAD4-208ENST00000589706 KRTAP4-4Q9BYR3 166 aa2.39□□□□□ -2.03
SMAD4-208ENST00000589706 MDN1Q9NU22 5596 aa2.35□□□□□ -2.03
SMAD4-208ENST00000589706 SPRR2EP22531 72 aa2.32□□□□□ -2.04
SMAD4-208ENST00000589706 SPRR2BP35325 72 aa2.32□□□□□ -2.04
SMAD4-208ENST00000589706 SPRR2AP35326 72 aa2.32□□□□□ -2.04
SMAD4-208ENST00000589706 SPRR2DP22532 72 aa2.25□□□□□ -2.05
SMAD4-208ENST00000589706 SPRR2FQ96RM1 72 aa2.25□□□□□ -2.05
SMAD4-208ENST00000589706 KRTAP5-5Q701N2 237 aaPredicted RBP2.24□□□□□ -2.05
SMAD4-208ENST00000589706 KRTAP8-1Q8IUC2 63 aa2.21□□□□□ -2.06
SMAD4-208ENST00000589706 DSTQ03001 7570 aaKnown RBP2.19□□□□□ -2.06
SMAD4-208ENST00000589706 MT1BP07438 61 aa2.18□□□□□ -2.06
SMAD4-208ENST00000589706 OBSCNQ5VST9 7968 aa2.14□□□□□ -2.07
SMAD4-208ENST00000589706 KRTAP5-10Q6L8G5 202 aa2.13□□□□□ -2.07
SMAD4-208ENST00000589706 KRTAP12-3P60328 96 aa2.12□□□□□ -2.07
SMAD4-208ENST00000589706 KRTAP5-7Q6L8G8 165 aa2.11□□□□□ -2.07
SMAD4-208ENST00000589706 KRTAP19-8Q3LI54 63 aa2.1□□□□□ -2.07
SMAD4-208ENST00000589706 LCE1CQ5T751 118 aa2.08□□□□□ -2.08
SMAD4-208ENST00000589706 LCE1BQ5T7P3 118 aa2.08□□□□□ -2.08
SMAD4-208ENST00000589706 KRTAP5-2Q701N4 177 aa2.07□□□□□ -2.08
SMAD4-208ENST00000589706 AHNAK2Q8IVF2 5795 aa2.06□□□□□ -2.08
SMAD4-208ENST00000589706 SPRR2GQ9BYE4 73 aa2.04□□□□□ -2.08
SMAD4-208ENST00000589706 KRTAP4-3Q9BYR4 195 aa2.04□□□□□ -2.08
SMAD4-208ENST00000589706 HMCN1Q96RW7 5635 aa2.01□□□□□ -2.09
SMAD4-208ENST00000589706 MT4P47944 62 aa2.01□□□□□ -2.09
SMAD4-208ENST00000589706 KRTAP12-4P60329 112 aa1.99□□□□□ -2.09
SMAD4-208ENST00000589706 MT1XP80297 61 aa1.93□□□□□ -2.1
SMAD4-208ENST00000589706 KRTAP19-5Q3LI72 72 aa1.86□□□□□ -2.11
SMAD4-208ENST00000589706 AHNAKQ09666 5890 aaKnown RBP1.84□□□□□ -2.11
SMAD4-208ENST00000589706 KRTAP19-3Q7Z4W3 81 aa1.8□□□□□ -2.12
SMAD4-208ENST00000589706 MUC5ACP98088 5654 aa1.8□□□□□ -2.12
SMAD4-208ENST00000589706 KRTAP20-2Q3LI61 65 aa1.77□□□□□ -2.13
SMAD4-208ENST00000589706 MUC5BQ9HC84 5762 aaPredicted RBP1.76□□□□□ -2.13
SMAD4-208ENST00000589706 MT1EP04732 61 aa1.74□□□□□ -2.13
SMAD4-208ENST00000589706 MT1GP13640 62 aa1.73□□□□□ -2.13
SMAD4-208ENST00000589706 KRTAP19-7Q3SYF9 63 aa1.73□□□□□ -2.13
SMAD4-208ENST00000589706 KRTAP5-8O75690 187 aa1.72□□□□□ -2.13
SMAD4-208ENST00000589706 MUC19Q7Z5P9 8384 aa1.71□□□□□ -2.14
SMAD4-208ENST00000589706 MT1AP04731 61 aa1.7□□□□□ -2.14
SMAD4-208ENST00000589706 MT1MQ8N339 61 aa1.69□□□□□ -2.14
SMAD4-208ENST00000589706 PRM1P04553 51 aa1.68□□□□□ -2.14
SMAD4-208ENST00000589706 MT1LQ93083 61 aa1.68□□□□□ -2.14
SMAD4-208ENST00000589706 SYNE1Q8NF91 8797 aaKnown RBP1.61□□□□□ -2.15
SMAD4-208ENST00000589706 KRTAP6-2Q3LI66 62 aa1.5□□□□□ -2.17
SMAD4-208ENST00000589706 KRTAP21-2Q3LI59 83 aa1.44□□□□□ -2.18
SMAD4-208ENST00000589706 KRTAP6-1Q3LI64 71 aa1.37□□□□□ -2.19
SMAD4-208ENST00000589706 PHGR1C9JFL3 82 aa1.26□□□□□ -2.21
SMAD4-208ENST00000589706 KRTAP21-1Q3LI58 79 aa1.18□□□□□ -2.22
SMAD4-208ENST00000589706 MUC16Q8WXI7 14507 aa0.91□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 9 ms