RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 KRTAP20-1Q3LI63 56 aa8.19□□□□□ -1.1
ATG4D-209ENST00000588857 SPRR2EP22531 72 aa8.18□□□□□ -1.1
ATG4D-209ENST00000588857 SPRR2BP35325 72 aa8.18□□□□□ -1.1
ATG4D-209ENST00000588857 SPRR2AP35326 72 aa8.18□□□□□ -1.1
ATG4D-209ENST00000588857 MT1EP04732 61 aa8.12□□□□□ -1.11
ATG4D-209ENST00000588857 LCE1AQ5T7P2 110 aa8.11□□□□□ -1.11
ATG4D-209ENST00000588857 KRTAP15-1Q3LI76 137 aa8.1□□□□□ -1.11
ATG4D-209ENST00000588857 KRTAP2-3P0C7H8 128 aa8.04□□□□□ -1.12
ATG4D-209ENST00000588857 KRTAP2-4Q9BYR9 128 aa8.04□□□□□ -1.12
ATG4D-209ENST00000588857 MT1LQ93083 61 aa7.93□□□□□ -1.14
ATG4D-209ENST00000588857 SPRR2DP22532 72 aa7.9□□□□□ -1.14
ATG4D-209ENST00000588857 KRTAP19-3Q7Z4W3 81 aa7.85□□□□□ -1.15
ATG4D-209ENST00000588857 KRTAP19-4Q3LI73 84 aa7.82□□□□□ -1.16
ATG4D-209ENST00000588857 KRTAP2-2Q9BYT5 123 aa7.79□□□□□ -1.16
ATG4D-209ENST00000588857 KRTAP2-1Q9BYU5 128 aa7.79□□□□□ -1.16
ATG4D-209ENST00000588857 MT1GP13640 62 aa7.78□□□□□ -1.16
ATG4D-209ENST00000588857 LCE3CQ5T5A8 94 aa7.75□□□□□ -1.17
ATG4D-209ENST00000588857 LCE5AQ5TCM9 118 aa7.72□□□□□ -1.17
ATG4D-209ENST00000588857 LCE3BQ5TA77 95 aa7.69□□□□□ -1.18
ATG4D-209ENST00000588857 MT1MQ8N339 61 aa7.67□□□□□ -1.18
ATG4D-209ENST00000588857 KRTAP4-7Q9BYR0 210 aa7.64□□□□□ -1.19
ATG4D-209ENST00000588857 SPRR5A0A1B0GTR4 108 aa7.51□□□□□ -1.21
ATG4D-209ENST00000588857 KRTAP4-3Q9BYR4 195 aa7.49□□□□□ -1.21
ATG4D-209ENST00000588857 DSTQ03001 7570 aaKnown RBP7.43□□□□□ -1.22
ATG4D-209ENST00000588857 KRTAP9-6A8MVA2 160 aa7.27□□□□□ -1.25
ATG4D-209ENST00000588857 LUZP6Q538Z0 58 aa7.26□□□□□ -1.25
ATG4D-209ENST00000588857 LOC100996750A0A140TA64 210 aa7.18□□□□□ -1.26
ATG4D-209ENST00000588857 KRTAP4-9Q9BYQ8 210 aa7.12□□□□□ -1.27
ATG4D-209ENST00000588857 LCE4AQ5TA78 99 aa7.02□□□□□ -1.29
ATG4D-209ENST00000588857 LCE1DQ5T752 114 aa6.97□□□□□ -1.29
ATG4D-209ENST00000588857 MT4P47944 62 aa6.91□□□□□ -1.3
ATG4D-209ENST00000588857 KRTAP5-4Q6L8H1 288 aa6.91□□□□□ -1.3
ATG4D-209ENST00000588857 KRTAP5-5Q701N2 237 aaPredicted RBP6.91□□□□□ -1.3
ATG4D-209ENST00000588857 NDUFAF8A1L188 74 aa6.9□□□□□ -1.31
ATG4D-209ENST00000588857 HMCN1Q96RW7 5635 aa6.82□□□□□ -1.32
ATG4D-209ENST00000588857 MT1AP04731 61 aa6.75□□□□□ -1.33
ATG4D-209ENST00000588857 KRTAP4-6Q9BYQ5 205 aa6.74□□□□□ -1.33
ATG4D-209ENST00000588857 GPR98Q8WXG9 6306 aa6.71□□□□□ -1.34
ATG4D-209ENST00000588857 KRTAP6-1Q3LI64 71 aa6.68□□□□□ -1.34
ATG4D-209ENST00000588857 H3BS24 57 aa6.58□□□□□ -1.36
ATG4D-209ENST00000588857 KRTAP12-4P60329 112 aa6.52□□□□□ -1.36
ATG4D-209ENST00000588857 AHNAK2Q8IVF2 5795 aa6.52□□□□□ -1.37
ATG4D-209ENST00000588857 KRTAP20-2Q3LI61 65 aa6.51□□□□□ -1.37
ATG4D-209ENST00000588857 SYNE1Q8NF91 8797 aaKnown RBP6.5□□□□□ -1.37
ATG4D-209ENST00000588857 KRTAP9-4Q9BYQ2 154 aa6.44□□□□□ -1.38
ATG4D-209ENST00000588857 KRTAP5-10Q6L8G5 202 aa6.41□□□□□ -1.38
ATG4D-209ENST00000588857 KRTAP5-3Q6L8H2 238 aa6.32□□□□□ -1.4
ATG4D-209ENST00000588857 KRTAP6-2Q3LI66 62 aa6.2□□□□□ -1.42
ATG4D-209ENST00000588857 MT3P25713 68 aa6.14□□□□□ -1.43
ATG4D-209ENST00000588857 KRTAP5-7Q6L8G8 165 aa6.14□□□□□ -1.43
ATG4D-209ENST00000588857 A0A0A0MQY5 61 aa6.09□□□□□ -1.43
ATG4D-209ENST00000588857 KRTAP5-2Q701N4 177 aa6.07□□□□□ -1.44
ATG4D-209ENST00000588857 KRTAP4-11Q9BYQ6 195 aa5.91□□□□□ -1.46
ATG4D-209ENST00000588857 LCE3DQ9BYE3 92 aa5.8□□□□□ -1.48
ATG4D-209ENST00000588857 KRTAP5-8O75690 187 aa5.72□□□□□ -1.49
ATG4D-209ENST00000588857 INE1O15225 51 aa5.7□□□□□ -1.5
ATG4D-209ENST00000588857 OBSCNQ5VST9 7968 aa5.67□□□□□ -1.5
ATG4D-209ENST00000588857 LCE3EQ5T5B0 92 aa5.61□□□□□ -1.51
ATG4D-209ENST00000588857 KRTAP5-1Q6L8H4 278 aa5.43□□□□□ -1.54
ATG4D-209ENST00000588857 KRTAP9-9Q9BYP9 154 aa5.39□□□□□ -1.55
ATG4D-209ENST00000588857 LCE1EQ5T753 118 aa5.38□□□□□ -1.55
ATG4D-209ENST00000588857 MUC5BQ9HC84 5762 aaPredicted RBP5.35□□□□□ -1.55
ATG4D-209ENST00000588857 MUC5ACP98088 5654 aa5.32□□□□□ -1.56
ATG4D-209ENST00000588857 AHNAKQ09666 5890 aaKnown RBP5.3□□□□□ -1.56
ATG4D-209ENST00000588857 LCE1BQ5T7P3 118 aa5.05□□□□□ -1.6
ATG4D-209ENST00000588857 LCE1CQ5T751 118 aa4.99□□□□□ -1.61
ATG4D-209ENST00000588857 KRTAP4-2Q9BYR5 136 aa4.99□□□□□ -1.61
ATG4D-209ENST00000588857 PRM1P04553 51 aa4.79□□□□□ -1.64
ATG4D-209ENST00000588857 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.65□□□□□ -1.67
ATG4D-209ENST00000588857 KRTAP4-12Q9BQ66 201 aa4.43□□□□□ -1.7
ATG4D-209ENST00000588857 KRTAP5-11Q6L8G4 156 aa4.42□□□□□ -1.7
ATG4D-209ENST00000588857 KRTAP21-2Q3LI59 83 aa4.36□□□□□ -1.71
ATG4D-209ENST00000588857 LCE1FQ5T754 118 aa4.26□□□□□ -1.73
ATG4D-209ENST00000588857 KRTAP4-4Q9BYR3 166 aa3.91□□□□□ -1.78
ATG4D-209ENST00000588857 PHGR1C9JFL3 82 aa3.8□□□□□ -1.8
ATG4D-209ENST00000588857 MUC19Q7Z5P9 8384 aa3.52□□□□□ -1.85
ATG4D-209ENST00000588857 KRTAP21-1Q3LI58 79 aa2.87□□□□□ -1.95
ATG4D-209ENST00000588857 MUC16Q8WXI7 14507 aa2.49□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 88 ms