RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 KRTAP2-3P0C7H8 128 aa3.27□□□□□ -1.89
CCDC40-212ENST00000574799 KRTAP2-4Q9BYR9 128 aa3.27□□□□□ -1.89
CCDC40-212ENST00000574799 KRTAP2-1Q9BYU5 128 aa3.27□□□□□ -1.89
CCDC40-212ENST00000574799 LCE2DQ5TA82 110 aaPredicted RBP3.27□□□□□ -1.89
CCDC40-212ENST00000574799 KRTAP12-4P60329 112 aa3.24□□□□□ -1.89
CCDC40-212ENST00000574799 MT1EP04732 61 aa3.22□□□□□ -1.89
CCDC40-212ENST00000574799 DSTQ03001 7570 aaKnown RBP3.21□□□□□ -1.9
CCDC40-212ENST00000574799 MACF1Q9UPN3 7388 aaKnown RBP3.2□□□□□ -1.9
CCDC40-212ENST00000574799 MT1LQ93083 61 aa3.18□□□□□ -1.9
CCDC40-212ENST00000574799 KRTAP9-6A0A140TA67 174 aa3.17□□□□□ -1.9
CCDC40-212ENST00000574799 SYNE2Q8WXH0 6885 aaKnown RBP3.13□□□□□ -1.91
CCDC40-212ENST00000574799 MDN1Q9NU22 5596 aa3.13□□□□□ -1.91
CCDC40-212ENST00000574799 KRTAP9-2Q9BYQ4 174 aa3.12□□□□□ -1.91
CCDC40-212ENST00000574799 MT1GP13640 62 aa3.09□□□□□ -1.91
CCDC40-212ENST00000574799 LOC100996750A0A140TA64 210 aa3.08□□□□□ -1.92
CCDC40-212ENST00000574799 KRTAP4-3Q9BYR4 195 aa3.08□□□□□ -1.92
CCDC40-212ENST00000574799 KRTAP19-4Q3LI73 84 aa3.06□□□□□ -1.92
CCDC40-212ENST00000574799 LCE3BQ5TA77 95 aa3.02□□□□□ -1.93
CCDC40-212ENST00000574799 MT1MQ8N339 61 aa3□□□□□ -1.93
CCDC40-212ENST00000574799 KRTAP19-3Q7Z4W3 81 aa3□□□□□ -1.93
CCDC40-212ENST00000574799 LCE5AQ5TCM9 118 aa3□□□□□ -1.93
CCDC40-212ENST00000574799 SPRR2FQ96RM1 72 aa2.99□□□□□ -1.93
CCDC40-212ENST00000574799 KRTAP4-9Q9BYQ8 210 aa2.94□□□□□ -1.94
CCDC40-212ENST00000574799 KRTAP5-9P26371 169 aa2.93□□□□□ -1.94
CCDC40-212ENST00000574799 PRM1P04553 51 aa2.9□□□□□ -1.95
CCDC40-212ENST00000574799 LCE3DQ9BYE3 92 aa2.88□□□□□ -1.95
CCDC40-212ENST00000574799 LCE1AQ5T7P2 110 aa2.87□□□□□ -1.95
CCDC40-212ENST00000574799 LCE3EQ5T5B0 92 aa2.85□□□□□ -1.95
CCDC40-212ENST00000574799 KRTAP9-7A8MTY7 169 aa2.82□□□□□ -1.96
CCDC40-212ENST00000574799 KRTAP5-5Q701N2 237 aaPredicted RBP2.8□□□□□ -1.96
CCDC40-212ENST00000574799 SPRR2EP22531 72 aa2.76□□□□□ -1.97
CCDC40-212ENST00000574799 SPRR2BP35325 72 aa2.76□□□□□ -1.97
CCDC40-212ENST00000574799 SPRR2AP35326 72 aa2.76□□□□□ -1.97
CCDC40-212ENST00000574799 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.75□□□□□ -1.97
CCDC40-212ENST00000574799 MUC19Q7Z5P9 8384 aa2.73□□□□□ -1.97
CCDC40-212ENST00000574799 KRTAP6-1Q3LI64 71 aa2.73□□□□□ -1.97
CCDC40-212ENST00000574799 MT1AP04731 61 aa2.69□□□□□ -1.98
CCDC40-212ENST00000574799 KRTAP6-3Q3LI67 103 aa2.67□□□□□ -1.98
CCDC40-212ENST00000574799 KRTAP6-2Q3LI66 62 aa2.64□□□□□ -1.99
CCDC40-212ENST00000574799 SPRR2DP22532 72 aa2.63□□□□□ -1.99
CCDC40-212ENST00000574799 NEBP20929 6669 aa2.61□□□□□ -1.99
CCDC40-212ENST00000574799 KRTAP5-4Q6L8H1 288 aa2.53□□□□□ -2.01
CCDC40-212ENST00000574799 MT4P47944 62 aa2.52□□□□□ -2.01
CCDC40-212ENST00000574799 KRTAP9-4Q9BYQ2 154 aa2.52□□□□□ -2.01
CCDC40-212ENST00000574799 KRTAP2-2Q9BYT5 123 aa2.51□□□□□ -2.01
CCDC40-212ENST00000574799 LCE1EQ5T753 118 aa2.43□□□□□ -2.02
CCDC40-212ENST00000574799 HMCN1Q96RW7 5635 aa2.42□□□□□ -2.02
CCDC40-212ENST00000574799 MT3P25713 68 aa2.42□□□□□ -2.02
CCDC40-212ENST00000574799 KRTAP4-6Q9BYQ5 205 aa2.41□□□□□ -2.02
CCDC40-212ENST00000574799 KRTAP20-1Q3LI63 56 aa2.36□□□□□ -2.03
CCDC40-212ENST00000574799 KRTAP5-2Q701N4 177 aa2.34□□□□□ -2.03
CCDC40-212ENST00000574799 LCE1FQ5T754 118 aa2.32□□□□□ -2.04
CCDC40-212ENST00000574799 KRTAP20-2Q3LI61 65 aa2.31□□□□□ -2.04
CCDC40-212ENST00000574799 LCE1DQ5T752 114 aa2.29□□□□□ -2.04
CCDC40-212ENST00000574799 KRTAP5-3Q6L8H2 238 aa2.29□□□□□ -2.04
CCDC40-212ENST00000574799 LCE4AQ5TA78 99 aa2.27□□□□□ -2.05
CCDC40-212ENST00000574799 KRTAP4-11Q9BYQ6 195 aa2.18□□□□□ -2.06
CCDC40-212ENST00000574799 GPR98Q8WXG9 6306 aa2.18□□□□□ -2.06
CCDC40-212ENST00000574799 LCE1BQ5T7P3 118 aa2.14□□□□□ -2.07
CCDC40-212ENST00000574799 KRTAP9-9Q9BYP9 154 aa2.14□□□□□ -2.07
CCDC40-212ENST00000574799 MUC5ACP98088 5654 aa2.12□□□□□ -2.07
CCDC40-212ENST00000574799 KRTAP5-7Q6L8G8 165 aa2.06□□□□□ -2.08
CCDC40-212ENST00000574799 KRTAP5-10Q6L8G5 202 aa2.05□□□□□ -2.08
CCDC40-212ENST00000574799 KRTAP5-1Q6L8H4 278 aa2.02□□□□□ -2.09
CCDC40-212ENST00000574799 AHNAK2Q8IVF2 5795 aa2□□□□□ -2.09
CCDC40-212ENST00000574799 KRTAP4-2Q9BYR5 136 aa1.98□□□□□ -2.09
CCDC40-212ENST00000574799 KRTAP5-8O75690 187 aa1.93□□□□□ -2.1
CCDC40-212ENST00000574799 LCE1CQ5T751 118 aa1.92□□□□□ -2.1
CCDC40-212ENST00000574799 MUC5BQ9HC84 5762 aaPredicted RBP1.88□□□□□ -2.11
CCDC40-212ENST00000574799 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.84□□□□□ -2.11
CCDC40-212ENST00000574799 AHNAKQ09666 5890 aaKnown RBP1.83□□□□□ -2.12
CCDC40-212ENST00000574799 KRTAP21-2Q3LI59 83 aa1.82□□□□□ -2.12
CCDC40-212ENST00000574799 KRTAP4-12Q9BQ66 201 aa1.82□□□□□ -2.12
CCDC40-212ENST00000574799 KRTAP4-4Q9BYR3 166 aa1.76□□□□□ -2.13
CCDC40-212ENST00000574799 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
CCDC40-212ENST00000574799 KRTAP5-11Q6L8G4 156 aa1.66□□□□□ -2.14
CCDC40-212ENST00000574799 PHGR1C9JFL3 82 aa1.46□□□□□ -2.18
CCDC40-212ENST00000574799 MUC16Q8WXI7 14507 aa0.98□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 108.3 ms