RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 KRTAP19-4Q3LI73 84 aa4.85□□□□□ -1.63
CCDC40-209ENST00000573474 MUC12Q9UKN1 5478 aa4.85□□□□□ -1.63
CCDC40-209ENST00000573474 KRTAP19-3Q7Z4W3 81 aa4.83□□□□□ -1.64
CCDC40-209ENST00000573474 MT1GP13640 62 aa4.8□□□□□ -1.64
CCDC40-209ENST00000573474 LCE1AQ5T7P2 110 aa4.79□□□□□ -1.64
CCDC40-209ENST00000573474 SPRR2EP22531 72 aa4.78□□□□□ -1.64
CCDC40-209ENST00000573474 SPRR2BP35325 72 aa4.78□□□□□ -1.64
CCDC40-209ENST00000573474 SPRR2AP35326 72 aa4.78□□□□□ -1.64
CCDC40-209ENST00000573474 LCE3CQ5T5A8 94 aa4.76□□□□□ -1.65
CCDC40-209ENST00000573474 LCE5AQ5TCM9 118 aa4.76□□□□□ -1.65
CCDC40-209ENST00000573474 MDN1Q9NU22 5596 aa4.75□□□□□ -1.65
CCDC40-209ENST00000573474 MT1MQ8N339 61 aa4.71□□□□□ -1.66
CCDC40-209ENST00000573474 NEBP20929 6669 aa4.68□□□□□ -1.66
CCDC40-209ENST00000573474 KRTAP4-7Q9BYR0 210 aa4.68□□□□□ -1.66
CCDC40-209ENST00000573474 SPRR5A0A1B0GTR4 108 aa4.62□□□□□ -1.67
CCDC40-209ENST00000573474 SPRR2DP22532 72 aa4.61□□□□□ -1.67
CCDC40-209ENST00000573474 KRTAP4-3Q9BYR4 195 aa4.59□□□□□ -1.67
CCDC40-209ENST00000573474 H3BS24 57 aa4.5□□□□□ -1.69
CCDC40-209ENST00000573474 KRTAP9-6A8MVA2 160 aa4.47□□□□□ -1.69
CCDC40-209ENST00000573474 DSTQ03001 7570 aaKnown RBP4.44□□□□□ -1.7
CCDC40-209ENST00000573474 LCE3BQ5TA77 95 aa4.43□□□□□ -1.7
CCDC40-209ENST00000573474 LUZP6Q538Z0 58 aa4.42□□□□□ -1.7
CCDC40-209ENST00000573474 LOC100996750A0A140TA64 210 aa4.4□□□□□ -1.71
CCDC40-209ENST00000573474 KRTAP20-1Q3LI63 56 aa4.4□□□□□ -1.71
CCDC40-209ENST00000573474 KRTAP2-3P0C7H8 128 aa4.38□□□□□ -1.71
CCDC40-209ENST00000573474 KRTAP2-4Q9BYR9 128 aa4.38□□□□□ -1.71
CCDC40-209ENST00000573474 KRTAP2-2Q9BYT5 123 aa4.27□□□□□ -1.73
CCDC40-209ENST00000573474 KRTAP2-1Q9BYU5 128 aa4.27□□□□□ -1.73
CCDC40-209ENST00000573474 KRTAP5-5Q701N2 237 aaPredicted RBP4.26□□□□□ -1.73
CCDC40-209ENST00000573474 NDUFAF8A1L188 74 aa4.19□□□□□ -1.74
CCDC40-209ENST00000573474 MT1AP04731 61 aa4.16□□□□□ -1.74
CCDC40-209ENST00000573474 KRTAP5-4Q6L8H1 288 aa4.14□□□□□ -1.75
CCDC40-209ENST00000573474 LCE4AQ5TA78 99 aa4.11□□□□□ -1.75
CCDC40-209ENST00000573474 KRTAP6-1Q3LI64 71 aa4.1□□□□□ -1.75
CCDC40-209ENST00000573474 A0A0A0MQY5 61 aa4.05□□□□□ -1.76
CCDC40-209ENST00000573474 SYNE1Q8NF91 8797 aaKnown RBP4.04□□□□□ -1.76
CCDC40-209ENST00000573474 KRTAP12-4P60329 112 aa4.02□□□□□ -1.77
CCDC40-209ENST00000573474 MT4P47944 62 aa3.98□□□□□ -1.77
CCDC40-209ENST00000573474 KRTAP9-4Q9BYQ2 154 aa3.97□□□□□ -1.77
CCDC40-209ENST00000573474 KRTAP4-9Q9BYQ8 210 aa3.97□□□□□ -1.77
CCDC40-209ENST00000573474 LCE1DQ5T752 114 aa3.94□□□□□ -1.78
CCDC40-209ENST00000573474 KRTAP4-6Q9BYQ5 205 aa3.94□□□□□ -1.78
CCDC40-209ENST00000573474 HMCN1Q96RW7 5635 aa3.87□□□□□ -1.79
CCDC40-209ENST00000573474 KRTAP20-2Q3LI61 65 aa3.87□□□□□ -1.79
CCDC40-209ENST00000573474 KRTAP6-2Q3LI66 62 aa3.81□□□□□ -1.8
CCDC40-209ENST00000573474 MT3P25713 68 aa3.79□□□□□ -1.8
CCDC40-209ENST00000573474 KRTAP5-3Q6L8H2 238 aa3.74□□□□□ -1.81
CCDC40-209ENST00000573474 KRTAP5-2Q701N4 177 aa3.73□□□□□ -1.81
CCDC40-209ENST00000573474 GPR98Q8WXG9 6306 aa3.59□□□□□ -1.84
CCDC40-209ENST00000573474 LCE3DQ9BYE3 92 aa3.56□□□□□ -1.84
CCDC40-209ENST00000573474 AHNAK2Q8IVF2 5795 aa3.55□□□□□ -1.84
CCDC40-209ENST00000573474 INE1O15225 51 aa3.49□□□□□ -1.85
CCDC40-209ENST00000573474 KRTAP5-10Q6L8G5 202 aa3.47□□□□□ -1.85
CCDC40-209ENST00000573474 OBSCNQ5VST9 7968 aa3.45□□□□□ -1.86
CCDC40-209ENST00000573474 LCE3EQ5T5B0 92 aa3.45□□□□□ -1.86
CCDC40-209ENST00000573474 KRTAP4-11Q9BYQ6 195 aa3.39□□□□□ -1.87
CCDC40-209ENST00000573474 LCE1EQ5T753 118 aa3.33□□□□□ -1.88
CCDC40-209ENST00000573474 KRTAP5-7Q6L8G8 165 aa3.29□□□□□ -1.88
CCDC40-209ENST00000573474 KRTAP5-8O75690 187 aa3.25□□□□□ -1.89
CCDC40-209ENST00000573474 KRTAP5-1Q6L8H4 278 aa3.24□□□□□ -1.89
CCDC40-209ENST00000573474 MUC5ACP98088 5654 aa3.15□□□□□ -1.9
CCDC40-209ENST00000573474 LCE1BQ5T7P3 118 aa3.09□□□□□ -1.91
CCDC40-209ENST00000573474 LCE1CQ5T751 118 aa3.08□□□□□ -1.92
CCDC40-209ENST00000573474 KRTAP4-2Q9BYR5 136 aa3.08□□□□□ -1.92
CCDC40-209ENST00000573474 KRTAP9-9Q9BYP9 154 aa2.99□□□□□ -1.93
CCDC40-209ENST00000573474 PRM1P04553 51 aa2.93□□□□□ -1.94
CCDC40-209ENST00000573474 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.88□□□□□ -1.95
CCDC40-209ENST00000573474 MUC5BQ9HC84 5762 aaPredicted RBP2.85□□□□□ -1.95
CCDC40-209ENST00000573474 AHNAKQ09666 5890 aaKnown RBP2.84□□□□□ -1.96
CCDC40-209ENST00000573474 KRTAP5-11Q6L8G4 156 aa2.73□□□□□ -1.97
CCDC40-209ENST00000573474 KRTAP21-2Q3LI59 83 aa2.69□□□□□ -1.98
CCDC40-209ENST00000573474 KRTAP4-12Q9BQ66 201 aa2.66□□□□□ -1.98
CCDC40-209ENST00000573474 LCE1FQ5T754 118 aa2.52□□□□□ -2.01
CCDC40-209ENST00000573474 KRTAP4-4Q9BYR3 166 aa2.39□□□□□ -2.03
CCDC40-209ENST00000573474 PHGR1C9JFL3 82 aa2.34□□□□□ -2.03
CCDC40-209ENST00000573474 MUC19Q7Z5P9 8384 aa2.06□□□□□ -2.08
CCDC40-209ENST00000573474 KRTAP21-1Q3LI58 79 aa1.77□□□□□ -2.13
CCDC40-209ENST00000573474 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 147.6 ms