RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	KRTAP25-1	Q3LHN0	102 aa		6.69	□□□□□ -1.34
COMMD4-222	ENST00000568034	MT1E	P04732	61 aa		6.68	□□□□□ -1.34
COMMD4-222	ENST00000568034	KRTAP19-5	Q3LI72	72 aa		6.68	□□□□□ -1.34
COMMD4-222	ENST00000568034	KRTAP2-3	P0C7H8	128 aa		6.67	□□□□□ -1.34
COMMD4-222	ENST00000568034	KRTAP2-4	Q9BYR9	128 aa		6.67	□□□□□ -1.34
COMMD4-222	ENST00000568034	KRTAP19-3	Q7Z4W3	81 aa		6.52	□□□□□ -1.37
COMMD4-222	ENST00000568034	SPRR2D	P22532	72 aa		6.5	□□□□□ -1.37
COMMD4-222	ENST00000568034	KRTAP23-1	A1A580	65 aa		6.48	□□□□□ -1.37
COMMD4-222	ENST00000568034	LCE5A	Q5TCM9	118 aa		6.48	□□□□□ -1.37
COMMD4-222	ENST00000568034	KRTAP12-3	P60328	96 aa		6.46	□□□□□ -1.38
COMMD4-222	ENST00000568034	MT1L	Q93083	61 aa		6.45	□□□□□ -1.38
COMMD4-222	ENST00000568034	KRTAP2-2	Q9BYT5	123 aa		6.45	□□□□□ -1.38
COMMD4-222	ENST00000568034	KRTAP2-1	Q9BYU5	128 aa		6.45	□□□□□ -1.38
COMMD4-222	ENST00000568034	MT1G	P13640	62 aa		6.38	□□□□□ -1.39
COMMD4-222	ENST00000568034	LCE3B	Q5TA77	95 aa		6.33	□□□□□ -1.4
COMMD4-222	ENST00000568034	PP632	Q6XCG6	107 aa		6.32	□□□□□ -1.4
COMMD4-222	ENST00000568034	MT1M	Q8N339	61 aa		6.32	□□□□□ -1.4
COMMD4-222	ENST00000568034	DST	Q03001	7570 aa	Known RBP	6.22	□□□□□ -1.41
COMMD4-222	ENST00000568034	KRTAP15-1	Q3LI76	137 aa		6.18	□□□□□ -1.42
COMMD4-222	ENST00000568034	KRTAP4-7	Q9BYR0	210 aa		6.17	□□□□□ -1.42
COMMD4-222	ENST00000568034	KRTAP4-3	Q9BYR4	195 aa		6.17	□□□□□ -1.42
COMMD4-222	ENST00000568034	KRTAP19-4	Q3LI73	84 aa		6.07	□□□□□ -1.44
COMMD4-222	ENST00000568034	LCE3C	Q5T5A8	94 aa		5.99	□□□□□ -1.45
COMMD4-222	ENST00000568034	KRTAP4-9	Q9BYQ8	210 aa		5.94	□□□□□ -1.46
COMMD4-222	ENST00000568034	LOC100996750	A0A140TA64	210 aa		5.82	□□□□□ -1.48
COMMD4-222	ENST00000568034	GPR98	Q8WXG9	6306 aa		5.81	□□□□□ -1.48
COMMD4-222	ENST00000568034	KRTAP5-4	Q6L8H1	288 aa		5.79	□□□□□ -1.48
COMMD4-222	ENST00000568034	KRTAP5-5	Q701N2	237 aa	Predicted RBP	5.79	□□□□□ -1.48
COMMD4-222	ENST00000568034	LCE1D	Q5T752	114 aa		5.77	□□□□□ -1.49
COMMD4-222	ENST00000568034	LCE4A	Q5TA78	99 aa		5.76	□□□□□ -1.49
COMMD4-222	ENST00000568034	MT4	P47944	62 aa		5.72	□□□□□ -1.49
COMMD4-222	ENST00000568034	KRTAP9-6	A8MVA2	160 aa		5.71	□□□□□ -1.5
COMMD4-222	ENST00000568034	HMCN1	Q96RW7	5635 aa		5.65	□□□□□ -1.5
COMMD4-222	ENST00000568034	LUZP6	Q538Z0	58 aa		5.61	□□□□□ -1.51
COMMD4-222	ENST00000568034	SYNE1	Q8NF91	8797 aa	Known RBP	5.6	□□□□□ -1.51
COMMD4-222	ENST00000568034	KRTAP4-6	Q9BYQ5	205 aa		5.57	□□□□□ -1.52
COMMD4-222	ENST00000568034	SPRR5	A0A1B0GTR4	108 aa		5.53	□□□□□ -1.52
COMMD4-222	ENST00000568034	AHNAK2	Q8IVF2	5795 aa		5.48	□□□□□ -1.53
COMMD4-222	ENST00000568034	MT1A	P04731	61 aa		5.48	□□□□□ -1.53
COMMD4-222	ENST00000568034	NDUFAF8	A1L188	74 aa		5.46	□□□□□ -1.54
COMMD4-222	ENST00000568034	KRTAP6-1	Q3LI64	71 aa		5.44	□□□□□ -1.54
COMMD4-222	ENST00000568034	KRTAP12-4	P60329	112 aa		5.43	□□□□□ -1.54
COMMD4-222	ENST00000568034	KRTAP20-2	Q3LI61	65 aa		5.42	□□□□□ -1.54
COMMD4-222	ENST00000568034	KRTAP5-10	Q6L8G5	202 aa		5.38	□□□□□ -1.55
COMMD4-222	ENST00000568034	KRTAP5-3	Q6L8H2	238 aa		5.27	□□□□□ -1.57
COMMD4-222	ENST00000568034	KRTAP9-4	Q9BYQ2	154 aa		5.24	□□□□□ -1.57
COMMD4-222	ENST00000568034	KRTAP5-7	Q6L8G8	165 aa		5.17	□□□□□ -1.58
COMMD4-222	ENST00000568034	KRTAP5-2	Q701N4	177 aa		5.16	□□□□□ -1.58
COMMD4-222	ENST00000568034	KRTAP6-2	Q3LI66	62 aa		5.09	□□□□□ -1.59
COMMD4-222	ENST00000568034		H3BS24	57 aa		5.07	□□□□□ -1.6
COMMD4-222	ENST00000568034		A0A0A0MQY5	61 aa		4.97	□□□□□ -1.61
COMMD4-222	ENST00000568034	MT3	P25713	68 aa		4.96	□□□□□ -1.62
COMMD4-222	ENST00000568034	KRTAP4-11	Q9BYQ6	195 aa		4.85	□□□□□ -1.63
COMMD4-222	ENST00000568034	OBSCN	Q5VST9	7968 aa		4.76	□□□□□ -1.65
COMMD4-222	ENST00000568034	KRTAP5-8	O75690	187 aa		4.7	□□□□□ -1.66
COMMD4-222	ENST00000568034	INE1	O15225	51 aa		4.59	□□□□□ -1.67
COMMD4-222	ENST00000568034	KRTAP5-1	Q6L8H4	278 aa		4.55	□□□□□ -1.68
COMMD4-222	ENST00000568034	MUC5AC	P98088	5654 aa		4.52	□□□□□ -1.69
COMMD4-222	ENST00000568034	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.5	□□□□□ -1.69
COMMD4-222	ENST00000568034	AHNAK	Q09666	5890 aa	Known RBP	4.47	□□□□□ -1.69
COMMD4-222	ENST00000568034	LCE1E	Q5T753	118 aa		4.47	□□□□□ -1.69
COMMD4-222	ENST00000568034	KRTAP9-9	Q9BYP9	154 aa		4.46	□□□□□ -1.7
COMMD4-222	ENST00000568034	LCE3D	Q9BYE3	92 aa		4.39	□□□□□ -1.71
COMMD4-222	ENST00000568034	KRTAP4-2	Q9BYR5	136 aa		4.23	□□□□□ -1.73
COMMD4-222	ENST00000568034	LCE3E	Q5T5B0	92 aa		4.2	□□□□□ -1.74
COMMD4-222	ENST00000568034	LCE1C	Q5T751	118 aa		4.15	□□□□□ -1.75
COMMD4-222	ENST00000568034	LCE1B	Q5T7P3	118 aa		4.15	□□□□□ -1.75
COMMD4-222	ENST00000568034	KRTAP4-12	Q9BQ66	201 aa		3.99	□□□□□ -1.77
COMMD4-222	ENST00000568034	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.86	□□□□□ -1.79
COMMD4-222	ENST00000568034	KRTAP5-11	Q6L8G4	156 aa		3.73	□□□□□ -1.81
COMMD4-222	ENST00000568034	KRTAP21-2	Q3LI59	83 aa		3.59	□□□□□ -1.83
COMMD4-222	ENST00000568034	PRM1	P04553	51 aa		3.55	□□□□□ -1.84
COMMD4-222	ENST00000568034	LCE1F	Q5T754	118 aa		3.5	□□□□□ -1.85
COMMD4-222	ENST00000568034	PHGR1	C9JFL3	82 aa		3.21	□□□□□ -1.9
COMMD4-222	ENST00000568034	KRTAP4-4	Q9BYR3	166 aa		3.2	□□□□□ -1.9
COMMD4-222	ENST00000568034	MUC19	Q7Z5P9	8384 aa		2.92	□□□□□ -1.94
COMMD4-222	ENST00000568034	KRTAP21-1	Q3LI58	79 aa		2.36	□□□□□ -2.03
COMMD4-222	ENST00000568034	MUC16	Q8WXI7	14507 aa		2.09	□□□□□ -2.07

Retrieved 78 of 20,778 RNA–protein pairs in 10.8 ms