RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 KRTAP9-7A8MTY7 169 aa10.91□□□□□ -0.66
CTCF-203ENST00000566078 KRTAP19-3Q7Z4W3 81 aa10.8□□□□□ -0.68
CTCF-203ENST00000566078 MDN1Q9NU22 5596 aa10.79□□□□□ -0.68
CTCF-203ENST00000566078 LCE1AQ5T7P2 110 aa10.72□□□□□ -0.69
CTCF-203ENST00000566078 SPRR2EP22531 72 aa10.71□□□□□ -0.69
CTCF-203ENST00000566078 SPRR2BP35325 72 aa10.71□□□□□ -0.69
CTCF-203ENST00000566078 SPRR2AP35326 72 aa10.71□□□□□ -0.69
CTCF-203ENST00000566078 MT1GP13640 62 aa10.66□□□□□ -0.7
CTCF-203ENST00000566078 LCE5AQ5TCM9 118 aa10.64□□□□□ -0.71
CTCF-203ENST00000566078 KRTAP19-4Q3LI73 84 aa10.62□□□□□ -0.71
CTCF-203ENST00000566078 LCE3CQ5T5A8 94 aa10.6□□□□□ -0.71
CTCF-203ENST00000566078 MT1MQ8N339 61 aa10.55□□□□□ -0.72
CTCF-203ENST00000566078 KRTAP4-7Q9BYR0 210 aa10.53□□□□□ -0.72
CTCF-203ENST00000566078 NEBP20929 6669 aa10.48□□□□□ -0.73
CTCF-203ENST00000566078 KRTAP4-3Q9BYR4 195 aa10.34□□□□□ -0.75
CTCF-203ENST00000566078 SPRR2DP22532 72 aa10.33□□□□□ -0.76
CTCF-203ENST00000566078 SPRR5A0A1B0GTR4 108 aa10.27□□□□□ -0.77
CTCF-203ENST00000566078 DSTQ03001 7570 aaKnown RBP10.1□□□□□ -0.79
CTCF-203ENST00000566078 KRTAP9-6A8MVA2 160 aa10.01□□□□□ -0.81
CTCF-203ENST00000566078 LCE3BQ5TA77 95 aa9.93□□□□□ -0.82
CTCF-203ENST00000566078 LOC100996750A0A140TA64 210 aa9.91□□□□□ -0.82
CTCF-203ENST00000566078 LUZP6Q538Z0 58 aa9.78□□□□□ -0.84
CTCF-203ENST00000566078 KRTAP2-3P0C7H8 128 aa9.74□□□□□ -0.85
CTCF-203ENST00000566078 KRTAP2-4Q9BYR9 128 aa9.74□□□□□ -0.85
CTCF-203ENST00000566078 KRTAP20-1Q3LI63 56 aa9.68□□□□□ -0.86
CTCF-203ENST00000566078 KRTAP5-5Q701N2 237 aaPredicted RBP9.53□□□□□ -0.88
CTCF-203ENST00000566078 KRTAP2-2Q9BYT5 123 aa9.51□□□□□ -0.89
CTCF-203ENST00000566078 KRTAP2-1Q9BYU5 128 aa9.51□□□□□ -0.89
CTCF-203ENST00000566078 NDUFAF8A1L188 74 aa9.35□□□□□ -0.91
CTCF-203ENST00000566078 MT1AP04731 61 aa9.27□□□□□ -0.92
CTCF-203ENST00000566078 KRTAP5-4Q6L8H1 288 aa9.23□□□□□ -0.93
CTCF-203ENST00000566078 KRTAP6-1Q3LI64 71 aa9.2□□□□□ -0.94
CTCF-203ENST00000566078 LCE4AQ5TA78 99 aa9.13□□□□□ -0.95
CTCF-203ENST00000566078 SYNE1Q8NF91 8797 aaKnown RBP9.07□□□□□ -0.96
CTCF-203ENST00000566078 MT4P47944 62 aa8.97□□□□□ -0.97
CTCF-203ENST00000566078 KRTAP4-9Q9BYQ8 210 aa8.94□□□□□ -0.98
CTCF-203ENST00000566078 KRTAP12-4P60329 112 aa8.92□□□□□ -0.98
CTCF-203ENST00000566078 LCE1DQ5T752 114 aa8.86□□□□□ -0.99
CTCF-203ENST00000566078 KRTAP4-6Q9BYQ5 205 aa8.84□□□□□ -0.99
CTCF-203ENST00000566078 KRTAP9-4Q9BYQ2 154 aa8.83□□□□□ -1
CTCF-203ENST00000566078 HMCN1Q96RW7 5635 aa8.77□□□□□ -1
CTCF-203ENST00000566078 KRTAP20-2Q3LI61 65 aa8.66□□□□□ -1.02
CTCF-203ENST00000566078 KRTAP6-2Q3LI66 62 aa8.53□□□□□ -1.04
CTCF-203ENST00000566078 MT3P25713 68 aa8.4□□□□□ -1.06
CTCF-203ENST00000566078 KRTAP5-3Q6L8H2 238 aa8.34□□□□□ -1.07
CTCF-203ENST00000566078 KRTAP5-2Q701N4 177 aa8.33□□□□□ -1.08
CTCF-203ENST00000566078 A0A0A0MQY5 61 aa8.11□□□□□ -1.11
CTCF-203ENST00000566078 AHNAK2Q8IVF2 5795 aa7.96□□□□□ -1.14
CTCF-203ENST00000566078 LCE3DQ9BYE3 92 aa7.9□□□□□ -1.14
CTCF-203ENST00000566078 H3BS24 57 aa7.75□□□□□ -1.17
CTCF-203ENST00000566078 OBSCNQ5VST9 7968 aa7.73□□□□□ -1.17
CTCF-203ENST00000566078 INE1O15225 51 aa7.67□□□□□ -1.18
CTCF-203ENST00000566078 LCE3EQ5T5B0 92 aa7.65□□□□□ -1.18
CTCF-203ENST00000566078 KRTAP4-11Q9BYQ6 195 aa7.56□□□□□ -1.2
CTCF-203ENST00000566078 KRTAP5-10Q6L8G5 202 aa7.5□□□□□ -1.21
CTCF-203ENST00000566078 GPR98Q8WXG9 6306 aa7.41□□□□□ -1.22
CTCF-203ENST00000566078 LCE1EQ5T753 118 aa7.35□□□□□ -1.23
CTCF-203ENST00000566078 KRTAP5-8O75690 187 aa7.29□□□□□ -1.24
CTCF-203ENST00000566078 KRTAP5-1Q6L8H4 278 aa7.24□□□□□ -1.25
CTCF-203ENST00000566078 MUC5ACP98088 5654 aa7.05□□□□□ -1.28
CTCF-203ENST00000566078 KRTAP5-7Q6L8G8 165 aa6.99□□□□□ -1.29
CTCF-203ENST00000566078 LCE1BQ5T7P3 118 aa6.94□□□□□ -1.3
CTCF-203ENST00000566078 KRTAP4-2Q9BYR5 136 aa6.89□□□□□ -1.31
CTCF-203ENST00000566078 LCE1CQ5T751 118 aa6.85□□□□□ -1.31
CTCF-203ENST00000566078 KRTAP9-9Q9BYP9 154 aa6.65□□□□□ -1.34
CTCF-203ENST00000566078 PRM1P04553 51 aa6.56□□□□□ -1.36
CTCF-203ENST00000566078 KRTAP4-12Q9BQ66 201 aa6.46□□□□□ -1.38
CTCF-203ENST00000566078 MUC5BQ9HC84 5762 aaPredicted RBP6.42□□□□□ -1.38
CTCF-203ENST00000566078 KRTAP5-6Q6L8G9 129 aaPredicted RBP6.39□□□□□ -1.39
CTCF-203ENST00000566078 AHNAKQ09666 5890 aaKnown RBP6.12□□□□□ -1.43
CTCF-203ENST00000566078 KRTAP5-11Q6L8G4 156 aa6.09□□□□□ -1.43
CTCF-203ENST00000566078 KRTAP21-2Q3LI59 83 aa6.02□□□□□ -1.45
CTCF-203ENST00000566078 LCE1FQ5T754 118 aa5.55□□□□□ -1.52
CTCF-203ENST00000566078 KRTAP4-4Q9BYR3 166 aa5.4□□□□□ -1.55
CTCF-203ENST00000566078 PHGR1C9JFL3 82 aa5.22□□□□□ -1.57
CTCF-203ENST00000566078 MUC19Q7Z5P9 8384 aa4.66□□□□□ -1.66
CTCF-203ENST00000566078 KRTAP21-1Q3LI58 79 aa3.92□□□□□ -1.78
CTCF-203ENST00000566078 MUC16Q8WXI7 14507 aa3.38□□□□□ -1.87
Retrieved 78 of 20,778 RNA–protein pairs in 6.5 ms