RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 KRTAP10-7P60409 375 aaPredicted RBP3.5□□□□□ -1.85
VPS39-207ENST00000563692 KRTAP4-7Q9BYR0 210 aa3.5□□□□□ -1.85
VPS39-207ENST00000563692 LCE3AQ5TA76 89 aa3.49□□□□□ -1.85
VPS39-207ENST00000563692 KMT2DO14686 5537 aa3.48□□□□□ -1.85
VPS39-207ENST00000563692 SPRR2EP22531 72 aa3.47□□□□□ -1.85
VPS39-207ENST00000563692 SPRR2BP35325 72 aa3.47□□□□□ -1.85
VPS39-207ENST00000563692 SPRR2AP35326 72 aa3.47□□□□□ -1.85
VPS39-207ENST00000563692 LCE1DQ5T752 114 aa3.44□□□□□ -1.86
VPS39-207ENST00000563692 MDN1Q9NU22 5596 aa3.43□□□□□ -1.86
VPS39-207ENST00000563692 KRTAP2-3P0C7H8 128 aa3.43□□□□□ -1.86
VPS39-207ENST00000563692 KRTAP2-4Q9BYR9 128 aa3.43□□□□□ -1.86
VPS39-207ENST00000563692 KRTAP12-3P60328 96 aa3.39□□□□□ -1.87
VPS39-207ENST00000563692 LCE1AQ5T7P2 110 aa3.38□□□□□ -1.87
VPS39-207ENST00000563692 KRTAP4-9Q9BYQ8 210 aa3.37□□□□□ -1.87
VPS39-207ENST00000563692 SPRR2DP22532 72 aa3.36□□□□□ -1.87
VPS39-207ENST00000563692 KRTAP4-2Q9BYR5 136 aa3.36□□□□□ -1.87
VPS39-207ENST00000563692 KRTAP15-1Q3LI76 137 aa3.35□□□□□ -1.87
VPS39-207ENST00000563692 KRTAP19-5Q3LI72 72 aa3.33□□□□□ -1.88
VPS39-207ENST00000563692 KRTAP2-2Q9BYT5 123 aa3.32□□□□□ -1.88
VPS39-207ENST00000563692 KRTAP2-1Q9BYU5 128 aa3.32□□□□□ -1.88
VPS39-207ENST00000563692 KRTAP19-4Q3LI73 84 aa3.26□□□□□ -1.89
VPS39-207ENST00000563692 KRTAP19-7Q3SYF9 63 aa3.25□□□□□ -1.89
VPS39-207ENST00000563692 LUZP6Q538Z0 58 aa3.22□□□□□ -1.89
VPS39-207ENST00000563692 KRTAP4-11Q9BYQ6 195 aa3.22□□□□□ -1.89
VPS39-207ENST00000563692 MT1EP04732 61 aa3.2□□□□□ -1.9
VPS39-207ENST00000563692 SPRR5A0A1B0GTR4 108 aa3.19□□□□□ -1.9
VPS39-207ENST00000563692 KRTAP5-3Q6L8H2 238 aa3.18□□□□□ -1.9
VPS39-207ENST00000563692 LCE3CQ5T5A8 94 aa3.17□□□□□ -1.9
VPS39-207ENST00000563692 LCE5AQ5TCM9 118 aa3.15□□□□□ -1.91
VPS39-207ENST00000563692 KRTAP19-3Q7Z4W3 81 aa3.15□□□□□ -1.91
VPS39-207ENST00000563692 MT1LQ93083 61 aa3.15□□□□□ -1.91
VPS39-207ENST00000563692 GPR98Q8WXG9 6306 aa3.12□□□□□ -1.91
VPS39-207ENST00000563692 NDUFAF8A1L188 74 aa3.1□□□□□ -1.91
VPS39-207ENST00000563692 MT1GP13640 62 aa3.1□□□□□ -1.91
VPS39-207ENST00000563692 LCE4AQ5TA78 99 aa3.08□□□□□ -1.92
VPS39-207ENST00000563692 DSTQ03001 7570 aaKnown RBP3.08□□□□□ -1.92
VPS39-207ENST00000563692 H3BS24 57 aa3.04□□□□□ -1.92
VPS39-207ENST00000563692 MT1MQ8N339 61 aa3.02□□□□□ -1.93
VPS39-207ENST00000563692 MT4P47944 62 aa2.93□□□□□ -1.94
VPS39-207ENST00000563692 KRTAP9-6A8MVA2 160 aa2.92□□□□□ -1.94
VPS39-207ENST00000563692 KRTAP4-3Q9BYR4 195 aa2.92□□□□□ -1.94
VPS39-207ENST00000563692 KRTAP5-4Q6L8H1 288 aa2.86□□□□□ -1.95
VPS39-207ENST00000563692 HMCN1Q96RW7 5635 aa2.83□□□□□ -1.96
VPS39-207ENST00000563692 A0A0A0MQY5 61 aa2.81□□□□□ -1.96
VPS39-207ENST00000563692 KRTAP12-4P60329 112 aa2.75□□□□□ -1.97
VPS39-207ENST00000563692 KRTAP5-5Q701N2 237 aaPredicted RBP2.73□□□□□ -1.97
VPS39-207ENST00000563692 AHNAK2Q8IVF2 5795 aa2.73□□□□□ -1.97
VPS39-207ENST00000563692 KRTAP20-2Q3LI61 65 aa2.72□□□□□ -1.97
VPS39-207ENST00000563692 KRTAP5-10Q6L8G5 202 aa2.72□□□□□ -1.97
VPS39-207ENST00000563692 MT1AP04731 61 aa2.69□□□□□ -1.98
VPS39-207ENST00000563692 SYNE1Q8NF91 8797 aaKnown RBP2.67□□□□□ -1.98
VPS39-207ENST00000563692 KRTAP5-7Q6L8G8 165 aa2.64□□□□□ -1.99
VPS39-207ENST00000563692 KRTAP6-1Q3LI64 71 aa2.63□□□□□ -1.99
VPS39-207ENST00000563692 INE1O15225 51 aa2.62□□□□□ -1.99
VPS39-207ENST00000563692 KRTAP5-2Q701N4 177 aa2.5□□□□□ -2.01
VPS39-207ENST00000563692 MT3P25713 68 aa2.48□□□□□ -2.01
VPS39-207ENST00000563692 KRTAP6-2Q3LI66 62 aa2.45□□□□□ -2.02
VPS39-207ENST00000563692 LCE3DQ9BYE3 92 aa2.41□□□□□ -2.02
VPS39-207ENST00000563692 KRTAP5-8O75690 187 aa2.39□□□□□ -2.03
VPS39-207ENST00000563692 LCE3EQ5T5B0 92 aa2.35□□□□□ -2.03
VPS39-207ENST00000563692 OBSCNQ5VST9 7968 aa2.35□□□□□ -2.03
VPS39-207ENST00000563692 AHNAKQ09666 5890 aaKnown RBP2.34□□□□□ -2.04
VPS39-207ENST00000563692 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.31□□□□□ -2.04
VPS39-207ENST00000563692 MUC5BQ9HC84 5762 aaPredicted RBP2.28□□□□□ -2.04
VPS39-207ENST00000563692 MUC5ACP98088 5654 aa2.28□□□□□ -2.04
VPS39-207ENST00000563692 KRTAP5-1Q6L8H4 278 aa2.24□□□□□ -2.05
VPS39-207ENST00000563692 LCE1EQ5T753 118 aa2.18□□□□□ -2.06
VPS39-207ENST00000563692 KRTAP5-11Q6L8G4 156 aa2.17□□□□□ -2.06
VPS39-207ENST00000563692 LCE1BQ5T7P3 118 aa2.07□□□□□ -2.08
VPS39-207ENST00000563692 PRM1P04553 51 aa2.03□□□□□ -2.08
VPS39-207ENST00000563692 LCE1CQ5T751 118 aa2.01□□□□□ -2.09
VPS39-207ENST00000563692 KRTAP4-4Q9BYR3 166 aa1.94□□□□□ -2.1
VPS39-207ENST00000563692 LCE1FQ5T754 118 aa1.79□□□□□ -2.12
VPS39-207ENST00000563692 KRTAP21-2Q3LI59 83 aa1.72□□□□□ -2.13
VPS39-207ENST00000563692 PHGR1C9JFL3 82 aa1.62□□□□□ -2.15
VPS39-207ENST00000563692 MUC19Q7Z5P9 8384 aa1.47□□□□□ -2.17
VPS39-207ENST00000563692 KRTAP21-1Q3LI58 79 aa1.25□□□□□ -2.21
VPS39-207ENST00000563692 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 8.3 ms