RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 KRTAP19-7Q3SYF9 63 aa3.79□□□□□ -1.8
SMG1-208ENST00000563448 KRTAP12-3P60328 96 aa3.76□□□□□ -1.81
SMG1-208ENST00000563448 NEBP20929 6669 aa3.74□□□□□ -1.81
SMG1-208ENST00000563448 KRTAP5-9P26371 169 aa3.73□□□□□ -1.81
SMG1-208ENST00000563448 MT1EP04732 61 aa3.72□□□□□ -1.81
SMG1-208ENST00000563448 SPRR2FQ96RM1 72 aa3.72□□□□□ -1.81
SMG1-208ENST00000563448 MUC12Q9UKN1 5478 aa3.7□□□□□ -1.82
SMG1-208ENST00000563448 SPRR5A0A1B0GTR4 108 aa3.66□□□□□ -1.82
SMG1-208ENST00000563448 KRTAP20-1Q3LI63 56 aa3.63□□□□□ -1.83
SMG1-208ENST00000563448 MT1LQ93083 61 aa3.63□□□□□ -1.83
SMG1-208ENST00000563448 MDN1Q9NU22 5596 aa3.59□□□□□ -1.83
SMG1-208ENST00000563448 KRTAP19-3Q7Z4W3 81 aa3.59□□□□□ -1.83
SMG1-208ENST00000563448 LCE1AQ5T7P2 110 aa3.58□□□□□ -1.84
SMG1-208ENST00000563448 SPRR2EP22531 72 aa3.56□□□□□ -1.84
SMG1-208ENST00000563448 SPRR2BP35325 72 aa3.56□□□□□ -1.84
SMG1-208ENST00000563448 SPRR2AP35326 72 aa3.56□□□□□ -1.84
SMG1-208ENST00000563448 LCE5AQ5TCM9 118 aa3.55□□□□□ -1.84
SMG1-208ENST00000563448 MT1GP13640 62 aa3.54□□□□□ -1.84
SMG1-208ENST00000563448 KRTAP19-4Q3LI73 84 aa3.51□□□□□ -1.85
SMG1-208ENST00000563448 LCE3CQ5T5A8 94 aa3.51□□□□□ -1.85
SMG1-208ENST00000563448 MT1MQ8N339 61 aa3.51□□□□□ -1.85
SMG1-208ENST00000563448 KRTAP4-7Q9BYR0 210 aa3.51□□□□□ -1.85
SMG1-208ENST00000563448 INE1O15225 51 aa3.49□□□□□ -1.85
SMG1-208ENST00000563448 KRTAP2-3P0C7H8 128 aa3.48□□□□□ -1.85
SMG1-208ENST00000563448 KRTAP2-4Q9BYR9 128 aa3.48□□□□□ -1.85
SMG1-208ENST00000563448 KRTAP4-3Q9BYR4 195 aa3.46□□□□□ -1.86
SMG1-208ENST00000563448 SPRR2DP22532 72 aa3.43□□□□□ -1.86
SMG1-208ENST00000563448 LCE3BQ5TA77 95 aa3.43□□□□□ -1.86
SMG1-208ENST00000563448 KRTAP4-12Q9BQ66 201 aa3.42□□□□□ -1.86
SMG1-208ENST00000563448 KRTAP2-2Q9BYT5 123 aa3.36□□□□□ -1.87
SMG1-208ENST00000563448 KRTAP2-1Q9BYU5 128 aa3.36□□□□□ -1.87
SMG1-208ENST00000563448 KRTAP9-6A8MVA2 160 aa3.34□□□□□ -1.88
SMG1-208ENST00000563448 DSTQ03001 7570 aaKnown RBP3.29□□□□□ -1.88
SMG1-208ENST00000563448 KRTAP9-9Q9BYP9 154 aa3.28□□□□□ -1.88
SMG1-208ENST00000563448 KRTAP9-4Q9BYQ2 154 aa3.28□□□□□ -1.88
SMG1-208ENST00000563448 LCE1DQ5T752 114 aa3.2□□□□□ -1.9
SMG1-208ENST00000563448 KRTAP5-5Q701N2 237 aaPredicted RBP3.19□□□□□ -1.9
SMG1-208ENST00000563448 KRTAP5-3Q6L8H2 238 aa3.15□□□□□ -1.91
SMG1-208ENST00000563448 GPR98Q8WXG9 6306 aa3.13□□□□□ -1.91
SMG1-208ENST00000563448 KRTAP4-9Q9BYQ8 210 aa3.1□□□□□ -1.91
SMG1-208ENST00000563448 KRTAP5-4Q6L8H1 288 aa3.09□□□□□ -1.91
SMG1-208ENST00000563448 MT1AP04731 61 aa3.09□□□□□ -1.92
SMG1-208ENST00000563448 KRTAP6-1Q3LI64 71 aa3.07□□□□□ -1.92
SMG1-208ENST00000563448 LCE4AQ5TA78 99 aa3.05□□□□□ -1.92
SMG1-208ENST00000563448 MT4P47944 62 aa2.98□□□□□ -1.93
SMG1-208ENST00000563448 KRTAP4-11Q9BYQ6 195 aa2.98□□□□□ -1.93
SMG1-208ENST00000563448 KRTAP4-2Q9BYR5 136 aa2.98□□□□□ -1.93
SMG1-208ENST00000563448 SYNE1Q8NF91 8797 aaKnown RBP2.98□□□□□ -1.93
SMG1-208ENST00000563448 KRTAP12-4P60329 112 aa2.95□□□□□ -1.94
SMG1-208ENST00000563448 HMCN1Q96RW7 5635 aa2.95□□□□□ -1.94
SMG1-208ENST00000563448 AHNAK2Q8IVF2 5795 aa2.91□□□□□ -1.94
SMG1-208ENST00000563448 KRTAP20-2Q3LI61 65 aa2.89□□□□□ -1.95
SMG1-208ENST00000563448 KRTAP5-10Q6L8G5 202 aa2.86□□□□□ -1.95
SMG1-208ENST00000563448 KRTAP6-2Q3LI66 62 aa2.83□□□□□ -1.96
SMG1-208ENST00000563448 MT3P25713 68 aa2.79□□□□□ -1.96
SMG1-208ENST00000563448 KRTAP5-2Q701N4 177 aa2.78□□□□□ -1.96
SMG1-208ENST00000563448 KRTAP5-7Q6L8G8 165 aa2.76□□□□□ -1.97
SMG1-208ENST00000563448 LCE3DQ9BYE3 92 aa2.61□□□□□ -1.99
SMG1-208ENST00000563448 OBSCNQ5VST9 7968 aa2.55□□□□□ -2
SMG1-208ENST00000563448 LCE3EQ5T5B0 92 aa2.52□□□□□ -2.01
SMG1-208ENST00000563448 KRTAP5-8O75690 187 aa2.45□□□□□ -2.02
SMG1-208ENST00000563448 LCE1EQ5T753 118 aa2.45□□□□□ -2.02
SMG1-208ENST00000563448 KRTAP5-1Q6L8H4 278 aa2.42□□□□□ -2.02
SMG1-208ENST00000563448 MUC5ACP98088 5654 aa2.41□□□□□ -2.02
SMG1-208ENST00000563448 AHNAKQ09666 5890 aaKnown RBP2.4□□□□□ -2.03
SMG1-208ENST00000563448 MUC5BQ9HC84 5762 aaPredicted RBP2.38□□□□□ -2.03
SMG1-208ENST00000563448 PRM1P04553 51 aa2.3□□□□□ -2.04
SMG1-208ENST00000563448 LCE1BQ5T7P3 118 aa2.3□□□□□ -2.04
SMG1-208ENST00000563448 LCE1CQ5T751 118 aa2.28□□□□□ -2.04
SMG1-208ENST00000563448 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.2□□□□□ -2.06
SMG1-208ENST00000563448 LCE1FQ5T754 118 aa2.12□□□□□ -2.07
SMG1-208ENST00000563448 KRTAP5-11Q6L8G4 156 aa2.03□□□□□ -2.08
SMG1-208ENST00000563448 KRTAP21-2Q3LI59 83 aa2.01□□□□□ -2.09
SMG1-208ENST00000563448 KRTAP4-4Q9BYR3 166 aa1.81□□□□□ -2.12
SMG1-208ENST00000563448 PHGR1C9JFL3 82 aa1.74□□□□□ -2.13
SMG1-208ENST00000563448 KRTAP21-1Q3LI58 79 aa1.53□□□□□ -2.16
SMG1-208ENST00000563448 MUC19Q7Z5P9 8384 aa1.52□□□□□ -2.17
SMG1-208ENST00000563448 MUC16Q8WXI7 14507 aa1.11□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 107.6 ms