RNA–Protein interactions for RNA: ENST00000563416.3

LINC00254-201, long intergenic non-protein coding RNA 254, humanhuman

TSL 3 BASIC

Gene LINC00254, Length 662 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00254-201ENST00000563416 MACF1Q9UPN3 7388 aaKnown RBP1.91□□□□□ -2.1
LINC00254-201ENST00000563416 MT-ATP8P03928 68 aa1.91□□□□□ -2.1
LINC00254-201ENST00000563416 KRTAP19-6Q3LI70 58 aa1.91□□□□□ -2.1
LINC00254-201ENST00000563416 SPRR2GQ9BYE4 73 aa1.9□□□□□ -2.11
LINC00254-201ENST00000563416 CDC42SE1Q9NRR8 79 aa1.9□□□□□ -2.11
LINC00254-201ENST00000563416 FAM236AA0A1B0GUQ0 79 aa1.89□□□□□ -2.11
LINC00254-201ENST00000563416 FAM236BA0A1B0GV22 79 aa1.89□□□□□ -2.11
LINC00254-201ENST00000563416 H0YAA0 97 aa1.89□□□□□ -2.11
LINC00254-201ENST00000563416 DMAC1Q96GE9 116 aa1.89□□□□□ -2.11
LINC00254-201ENST00000563416 A6NN06 94 aa1.88□□□□□ -2.11
LINC00254-201ENST00000563416 INE1O15225 51 aa1.88□□□□□ -2.11
LINC00254-201ENST00000563416 NDUFC1O43677 76 aa1.88□□□□□ -2.11
LINC00254-201ENST00000563416 KRTAP12-1P59990 96 aa1.88□□□□□ -2.11
LINC00254-201ENST00000563416 KRTAP19-8Q3LI54 63 aa1.88□□□□□ -2.11
LINC00254-201ENST00000563416 MT1BP07438 61 aa1.87□□□□□ -2.11
LINC00254-201ENST00000563416 CRIPTQ9P021 101 aa1.87□□□□□ -2.11
LINC00254-201ENST00000563416 Q5VV11 94 aa1.85□□□□□ -2.11
LINC00254-201ENST00000563416 SERP2Q8N6R1 65 aa1.84□□□□□ -2.11
LINC00254-201ENST00000563416 SYNE2Q8WXH0 6885 aaKnown RBP1.83□□□□□ -2.12
LINC00254-201ENST00000563416 ACYP2P14621 99 aa1.83□□□□□ -2.12
LINC00254-201ENST00000563416 C20orf197Q8N268 126 aa1.82□□□□□ -2.12
LINC00254-201ENST00000563416 SPTSSBQ8NFR3 76 aa1.79□□□□□ -2.12
LINC00254-201ENST00000563416 CHKB-CPT1BH3BT56 60 aa1.77□□□□□ -2.13
LINC00254-201ENST00000563416 H7BZZ5 65 aa1.77□□□□□ -2.13
LINC00254-201ENST00000563416 M0QZ58 72 aa1.77□□□□□ -2.13
LINC00254-201ENST00000563416 MT1XP80297 61 aa1.77□□□□□ -2.13
LINC00254-201ENST00000563416 CCDC179H3BU77 68 aa1.76□□□□□ -2.13
LINC00254-201ENST00000563416 PLAC4Q8WY50 150 aa1.75□□□□□ -2.13
LINC00254-201ENST00000563416 MUC12Q9UKN1 5478 aa1.75□□□□□ -2.13
LINC00254-201ENST00000563416 KMT2DO14686 5537 aa1.75□□□□□ -2.13
LINC00254-201ENST00000563416 NEBP20929 6669 aa1.73□□□□□ -2.13
LINC00254-201ENST00000563416 ATP5EP56381 51 aaPredicted RBP1.69□□□□□ -2.14
LINC00254-201ENST00000563416 SERP1Q9Y6X1 66 aa1.69□□□□□ -2.14
LINC00254-201ENST00000563416 MDN1Q9NU22 5596 aa1.68□□□□□ -2.14
LINC00254-201ENST00000563416 SPATA8Q6RVD6 105 aa1.66□□□□□ -2.14
LINC00254-201ENST00000563416 KRTAP8-1Q8IUC2 63 aa1.66□□□□□ -2.14
LINC00254-201ENST00000563416 A0A1B0GU69 56 aa1.65□□□□□ -2.15
LINC00254-201ENST00000563416 SPRR2FQ96RM1 72 aa1.65□□□□□ -2.15
LINC00254-201ENST00000563416 A0A0D9SG42 100 aa1.63□□□□□ -2.15
LINC00254-201ENST00000563416 LINC01558Q9Y6Z2 57 aa1.63□□□□□ -2.15
LINC00254-201ENST00000563416 SPRR2EP22531 72 aa1.62□□□□□ -2.15
LINC00254-201ENST00000563416 SPRR2BP35325 72 aa1.62□□□□□ -2.15
LINC00254-201ENST00000563416 SPRR2AP35326 72 aa1.62□□□□□ -2.15
LINC00254-201ENST00000563416 PRR15LQ9BU68 103 aa1.62□□□□□ -2.15
LINC00254-201ENST00000563416 HMCN1Q96RW7 5635 aa1.61□□□□□ -2.15
LINC00254-201ENST00000563416 KRTAP20-1Q3LI63 56 aa1.61□□□□□ -2.15
LINC00254-201ENST00000563416 KRTAP2-3P0C7H8 128 aa1.58□□□□□ -2.16
LINC00254-201ENST00000563416 KRTAP19-7Q3SYF9 63 aa1.58□□□□□ -2.16
LINC00254-201ENST00000563416 KRTAP2-4Q9BYR9 128 aa1.58□□□□□ -2.16
LINC00254-201ENST00000563416 UQCR11O14957 56 aa1.57□□□□□ -2.16
LINC00254-201ENST00000563416 MT1EP04732 61 aa1.56□□□□□ -2.16
LINC00254-201ENST00000563416 SPRR2DP22532 72 aa1.56□□□□□ -2.16
LINC00254-201ENST00000563416 C10orf95Q9H7T3 257 aa1.56□□□□□ -2.16
LINC00254-201ENST00000563416 DSTQ03001 7570 aaKnown RBP1.56□□□□□ -2.16
LINC00254-201ENST00000563416 TNP1P09430 55 aa1.54□□□□□ -2.16
LINC00254-201ENST00000563416 KRTAP19-3Q7Z4W3 81 aa1.54□□□□□ -2.16
LINC00254-201ENST00000563416 KRTAP2-1Q9BYU5 128 aa1.54□□□□□ -2.16
LINC00254-201ENST00000563416 KRTAP19-5Q3LI72 72 aa1.53□□□□□ -2.16
LINC00254-201ENST00000563416 MT1GP13640 62 aa1.51□□□□□ -2.17
LINC00254-201ENST00000563416 MT1LQ93083 61 aa1.5□□□□□ -2.17
LINC00254-201ENST00000563416 MT1MQ8N339 61 aa1.49□□□□□ -2.17
LINC00254-201ENST00000563416 SYNE1Q8NF91 8797 aaKnown RBP1.37□□□□□ -2.19
LINC00254-201ENST00000563416 MT4P47944 62 aa1.36□□□□□ -2.19
LINC00254-201ENST00000563416 GPR98Q8WXG9 6306 aa1.35□□□□□ -2.19
LINC00254-201ENST00000563416 AHNAK2Q8IVF2 5795 aa1.35□□□□□ -2.19
LINC00254-201ENST00000563416 KRTAP20-2Q3LI61 65 aa1.31□□□□□ -2.2
LINC00254-201ENST00000563416 MT1AP04731 61 aa1.28□□□□□ -2.2
LINC00254-201ENST00000563416 KRTAP5-10Q6L8G5 202 aa1.28□□□□□ -2.2
LINC00254-201ENST00000563416 KRTAP6-1Q3LI64 71 aa1.26□□□□□ -2.21
LINC00254-201ENST00000563416 KRTAP6-2Q3LI66 62 aa1.19□□□□□ -2.22
LINC00254-201ENST00000563416 MUC5ACP98088 5654 aa1.11□□□□□ -2.23
LINC00254-201ENST00000563416 AHNAKQ09666 5890 aaKnown RBP1.09□□□□□ -2.24
LINC00254-201ENST00000563416 MUC5BQ9HC84 5762 aaPredicted RBP1.06□□□□□ -2.24
LINC00254-201ENST00000563416 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
LINC00254-201ENST00000563416 PHGR1C9JFL3 82 aa0.77□□□□□ -2.29
LINC00254-201ENST00000563416 PRM1P04553 51 aa0.72□□□□□ -2.29
LINC00254-201ENST00000563416 KRTAP21-1Q3LI58 79 aa0.65□□□□□ -2.31
Retrieved 77 of 20,778 RNA–protein pairs in 71.2 ms