RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 LRP2P98164 4655 aa2.17□□□□□ -2.06
VPS35P1-201ENST00000563400 CRIPTQ9P021 101 aa2.17□□□□□ -2.06
VPS35P1-201ENST00000563400 RNF213Q63HN8 5207 aa2.16□□□□□ -2.06
VPS35P1-201ENST00000563400 LPAP08519 4548 aa2.13□□□□□ -2.07
VPS35P1-201ENST00000563400 H0YAA0 97 aa2.12□□□□□ -2.07
VPS35P1-201ENST00000563400 MT1HP80294 61 aa2.12□□□□□ -2.07
VPS35P1-201ENST00000563400 KRTAP4-1Q9BYQ7 146 aa2.12□□□□□ -2.07
VPS35P1-201ENST00000563400 FAT4Q6V0I7 4981 aa2.09□□□□□ -2.07
VPS35P1-201ENST00000563400 MUC17Q685J3 4493 aa2.08□□□□□ -2.08
VPS35P1-201ENST00000563400 M0QZ58 72 aa2.07□□□□□ -2.08
VPS35P1-201ENST00000563400 KRTAP19-2Q3LHN2 52 aa2.07□□□□□ -2.08
VPS35P1-201ENST00000563400 MUC2Q02817 5179 aa2.06□□□□□ -2.08
VPS35P1-201ENST00000563400 KRTAP5-5Q701N2 237 aaPredicted RBP2.06□□□□□ -2.08
VPS35P1-201ENST00000563400 KRTAP12-4P60329 112 aa2.01□□□□□ -2.09
VPS35P1-201ENST00000563400 LCE1CQ5T751 118 aa2□□□□□ -2.09
VPS35P1-201ENST00000563400 LCE1BQ5T7P3 118 aa2□□□□□ -2.09
VPS35P1-201ENST00000563400 KRTAP5-8O75690 187 aa1.99□□□□□ -2.09
VPS35P1-201ENST00000563400 MT2AP02795 61 aa1.99□□□□□ -2.09
VPS35P1-201ENST00000563400 CRCT1Q9UGL9 99 aa1.99□□□□□ -2.09
VPS35P1-201ENST00000563400 SPRR2GQ9BYE4 73 aa1.97□□□□□ -2.09
VPS35P1-201ENST00000563400 FLGP20930 4061 aaPredicted RBP1.97□□□□□ -2.09
VPS35P1-201ENST00000563400 MT1FP04733 61 aa1.95□□□□□ -2.1
VPS35P1-201ENST00000563400 C10orf95Q9H7T3 257 aa1.94□□□□□ -2.1
VPS35P1-201ENST00000563400 FSIP2Q5CZC0 6907 aa1.92□□□□□ -2.1
VPS35P1-201ENST00000563400 KRTAP19-8Q3LI54 63 aa1.91□□□□□ -2.1
VPS35P1-201ENST00000563400 KRTAP12-3P60328 96 aa1.91□□□□□ -2.1
VPS35P1-201ENST00000563400 KRTAP19-6Q3LI70 58 aa1.88□□□□□ -2.11
VPS35P1-201ENST00000563400 A0A0D9SG42 100 aa1.87□□□□□ -2.11
VPS35P1-201ENST00000563400 TNP1P09430 55 aa1.85□□□□□ -2.11
VPS35P1-201ENST00000563400 MT1BP07438 61 aa1.81□□□□□ -2.12
VPS35P1-201ENST00000563400 SSPOA2VEC9 5147 aa1.78□□□□□ -2.12
VPS35P1-201ENST00000563400 KRTAP8-1Q8IUC2 63 aa1.76□□□□□ -2.13
VPS35P1-201ENST00000563400 USH2AO75445 5202 aa1.74□□□□□ -2.13
VPS35P1-201ENST00000563400 MT1XP80297 61 aa1.74□□□□□ -2.13
VPS35P1-201ENST00000563400 FCGBPQ9Y6R7 5405 aaPredicted RBP1.74□□□□□ -2.13
VPS35P1-201ENST00000563400 SYNE2Q8WXH0 6885 aaKnown RBP1.69□□□□□ -2.14
VPS35P1-201ENST00000563400 SPRR2FQ96RM1 72 aa1.69□□□□□ -2.14
VPS35P1-201ENST00000563400 MACF1Q9UPN3 7388 aaKnown RBP1.69□□□□□ -2.14
VPS35P1-201ENST00000563400 NEBP20929 6669 aa1.66□□□□□ -2.14
VPS35P1-201ENST00000563400 KRTAP20-1Q3LI63 56 aa1.66□□□□□ -2.14
VPS35P1-201ENST00000563400 SPRR2EP22531 72 aa1.64□□□□□ -2.15
VPS35P1-201ENST00000563400 SPRR2BP35325 72 aa1.64□□□□□ -2.15
VPS35P1-201ENST00000563400 SPRR2AP35326 72 aa1.64□□□□□ -2.15
VPS35P1-201ENST00000563400 MT1GP13640 62 aa1.62□□□□□ -2.15
VPS35P1-201ENST00000563400 KRTAP5-7Q6L8G8 165 aa1.61□□□□□ -2.15
VPS35P1-201ENST00000563400 KRTAP2-3P0C7H8 128 aa1.61□□□□□ -2.15
VPS35P1-201ENST00000563400 KRTAP2-4Q9BYR9 128 aa1.61□□□□□ -2.15
VPS35P1-201ENST00000563400 SPRR2DP22532 72 aa1.59□□□□□ -2.16
VPS35P1-201ENST00000563400 KRTAP19-3Q7Z4W3 81 aa1.58□□□□□ -2.16
VPS35P1-201ENST00000563400 KRTAP19-5Q3LI72 72 aa1.57□□□□□ -2.16
VPS35P1-201ENST00000563400 MUC19Q7Z5P9 8384 aa1.57□□□□□ -2.16
VPS35P1-201ENST00000563400 KRTAP2-1Q9BYU5 128 aa1.56□□□□□ -2.16
VPS35P1-201ENST00000563400 MT1EP04732 61 aa1.56□□□□□ -2.16
VPS35P1-201ENST00000563400 KRTAP19-7Q3SYF9 63 aa1.55□□□□□ -2.16
VPS35P1-201ENST00000563400 MUC12Q9UKN1 5478 aa1.53□□□□□ -2.16
VPS35P1-201ENST00000563400 MT1LQ93083 61 aa1.51□□□□□ -2.17
VPS35P1-201ENST00000563400 GPR98Q8WXG9 6306 aa1.51□□□□□ -2.17
VPS35P1-201ENST00000563400 KMT2DO14686 5537 aa1.5□□□□□ -2.17
VPS35P1-201ENST00000563400 MDN1Q9NU22 5596 aa1.49□□□□□ -2.17
VPS35P1-201ENST00000563400 MT1MQ8N339 61 aa1.48□□□□□ -2.17
VPS35P1-201ENST00000563400 KRTAP21-2Q3LI59 83 aa1.39□□□□□ -2.19
VPS35P1-201ENST00000563400 DSTQ03001 7570 aaKnown RBP1.37□□□□□ -2.19
VPS35P1-201ENST00000563400 MT4P47944 62 aa1.34□□□□□ -2.2
VPS35P1-201ENST00000563400 MT1AP04731 61 aa1.33□□□□□ -2.2
VPS35P1-201ENST00000563400 KRTAP5-10Q6L8G5 202 aa1.31□□□□□ -2.2
VPS35P1-201ENST00000563400 AHNAK2Q8IVF2 5795 aa1.27□□□□□ -2.21
VPS35P1-201ENST00000563400 KRTAP20-2Q3LI61 65 aa1.26□□□□□ -2.21
VPS35P1-201ENST00000563400 KRTAP6-1Q3LI64 71 aa1.24□□□□□ -2.21
VPS35P1-201ENST00000563400 KRTAP6-2Q3LI66 62 aa1.2□□□□□ -2.22
VPS35P1-201ENST00000563400 SYNE1Q8NF91 8797 aaKnown RBP1.18□□□□□ -2.22
VPS35P1-201ENST00000563400 AHNAKQ09666 5890 aaKnown RBP1.17□□□□□ -2.22
VPS35P1-201ENST00000563400 MUC5BQ9HC84 5762 aaPredicted RBP1.14□□□□□ -2.23
VPS35P1-201ENST00000563400 MUC5ACP98088 5654 aa1.13□□□□□ -2.23
VPS35P1-201ENST00000563400 PRM1P04553 51 aa1.1□□□□□ -2.23
VPS35P1-201ENST00000563400 KRTAP21-1Q3LI58 79 aa0.9□□□□□ -2.26
VPS35P1-201ENST00000563400 PHGR1C9JFL3 82 aa0.77□□□□□ -2.29
VPS35P1-201ENST00000563400 MUC16Q8WXI7 14507 aa0.66□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 84.9 ms