RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 SYNE2Q8WXH0 6885 aaKnown RBP6.4□□□□□ -1.39
COMMD4-208ENST00000563220 MUC12Q9UKN1 5478 aa6.38□□□□□ -1.39
COMMD4-208ENST00000563220 LCE3CQ5T5A8 94 aa6.34□□□□□ -1.39
COMMD4-208ENST00000563220 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.32□□□□□ -1.4
COMMD4-208ENST00000563220 KRTAP5-9P26371 169 aa6.3□□□□□ -1.4
COMMD4-208ENST00000563220 KRTAP4-7Q9BYR0 210 aa6.28□□□□□ -1.4
COMMD4-208ENST00000563220 KRTAP19-3Q7Z4W3 81 aa6.28□□□□□ -1.4
COMMD4-208ENST00000563220 KRTAP19-4Q3LI73 84 aa6.26□□□□□ -1.41
COMMD4-208ENST00000563220 MT1GP13640 62 aa6.21□□□□□ -1.42
COMMD4-208ENST00000563220 KRTAP6-3Q3LI67 103 aa6.17□□□□□ -1.42
COMMD4-208ENST00000563220 LCE5AQ5TCM9 118 aa6.17□□□□□ -1.42
COMMD4-208ENST00000563220 MT1MQ8N339 61 aa6.16□□□□□ -1.42
COMMD4-208ENST00000563220 MDN1Q9NU22 5596 aa6.16□□□□□ -1.42
COMMD4-208ENST00000563220 LCE1AQ5T7P2 110 aa6.13□□□□□ -1.43
COMMD4-208ENST00000563220 KRTAP4-3Q9BYR4 195 aa6.1□□□□□ -1.43
COMMD4-208ENST00000563220 KRTAP9-6A8MVA2 160 aa6.06□□□□□ -1.44
COMMD4-208ENST00000563220 SPRR2EP22531 72 aa6.05□□□□□ -1.44
COMMD4-208ENST00000563220 SPRR2BP35325 72 aa6.05□□□□□ -1.44
COMMD4-208ENST00000563220 SPRR2AP35326 72 aa6.05□□□□□ -1.44
COMMD4-208ENST00000563220 KRTAP9-7A8MTY7 169 aa5.96□□□□□ -1.46
COMMD4-208ENST00000563220 INE1O15225 51 aa5.92□□□□□ -1.46
COMMD4-208ENST00000563220 LOC100996750A0A140TA64 210 aa5.9□□□□□ -1.47
COMMD4-208ENST00000563220 DSTQ03001 7570 aaKnown RBP5.89□□□□□ -1.47
COMMD4-208ENST00000563220 SPRR2DP22532 72 aa5.82□□□□□ -1.48
COMMD4-208ENST00000563220 NEBP20929 6669 aa5.76□□□□□ -1.49
COMMD4-208ENST00000563220 KRTAP2-3P0C7H8 128 aa5.71□□□□□ -1.5
COMMD4-208ENST00000563220 KRTAP2-4Q9BYR9 128 aa5.71□□□□□ -1.5
COMMD4-208ENST00000563220 KRTAP2-1Q9BYU5 128 aa5.71□□□□□ -1.5
COMMD4-208ENST00000563220 LCE3BQ5TA77 95 aa5.6□□□□□ -1.51
COMMD4-208ENST00000563220 KRTAP5-5Q701N2 237 aaPredicted RBP5.56□□□□□ -1.52
COMMD4-208ENST00000563220 MT1AP04731 61 aa5.43□□□□□ -1.54
COMMD4-208ENST00000563220 KRTAP6-1Q3LI64 71 aa5.43□□□□□ -1.54
COMMD4-208ENST00000563220 SYNE1Q8NF91 8797 aaKnown RBP5.31□□□□□ -1.56
COMMD4-208ENST00000563220 KRTAP5-4Q6L8H1 288 aa5.28□□□□□ -1.56
COMMD4-208ENST00000563220 KRTAP2-2Q9BYT5 123 aa5.28□□□□□ -1.56
COMMD4-208ENST00000563220 KRTAP20-1Q3LI63 56 aa5.27□□□□□ -1.57
COMMD4-208ENST00000563220 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
COMMD4-208ENST00000563220 LCE4AQ5TA78 99 aa5.14□□□□□ -1.59
COMMD4-208ENST00000563220 KRTAP12-4P60329 112 aa5.11□□□□□ -1.59
COMMD4-208ENST00000563220 MT4P47944 62 aa5.09□□□□□ -1.6
COMMD4-208ENST00000563220 KRTAP4-6Q9BYQ5 205 aa5.07□□□□□ -1.6
COMMD4-208ENST00000563220 KRTAP4-9Q9BYQ8 210 aa5.05□□□□□ -1.6
COMMD4-208ENST00000563220 KRTAP6-2Q3LI66 62 aa4.98□□□□□ -1.61
COMMD4-208ENST00000563220 LCE1DQ5T752 114 aa4.98□□□□□ -1.61
COMMD4-208ENST00000563220 KRTAP20-2Q3LI61 65 aa4.94□□□□□ -1.62
COMMD4-208ENST00000563220 HMCN1Q96RW7 5635 aa4.92□□□□□ -1.62
COMMD4-208ENST00000563220 MT3P25713 68 aa4.92□□□□□ -1.62
COMMD4-208ENST00000563220 KRTAP5-2Q701N4 177 aa4.79□□□□□ -1.64
COMMD4-208ENST00000563220 KRTAP5-3Q6L8H2 238 aa4.77□□□□□ -1.65
COMMD4-208ENST00000563220 LCE3DQ9BYE3 92 aa4.76□□□□□ -1.65
COMMD4-208ENST00000563220 LCE3EQ5T5B0 92 aa4.65□□□□□ -1.66
COMMD4-208ENST00000563220 OBSCNQ5VST9 7968 aa4.6□□□□□ -1.67
COMMD4-208ENST00000563220 PRM1P04553 51 aa4.32□□□□□ -1.72
COMMD4-208ENST00000563220 AHNAK2Q8IVF2 5795 aa4.32□□□□□ -1.72
COMMD4-208ENST00000563220 KRTAP4-11Q9BYQ6 195 aa4.28□□□□□ -1.72
COMMD4-208ENST00000563220 LCE1EQ5T753 118 aa4.25□□□□□ -1.73
COMMD4-208ENST00000563220 KRTAP5-1Q6L8H4 278 aa4.17□□□□□ -1.74
COMMD4-208ENST00000563220 KRTAP5-8O75690 187 aa4.12□□□□□ -1.75
COMMD4-208ENST00000563220 KRTAP5-10Q6L8G5 202 aa4.11□□□□□ -1.75
COMMD4-208ENST00000563220 LCE1BQ5T7P3 118 aa4.03□□□□□ -1.76
COMMD4-208ENST00000563220 KRTAP4-2Q9BYR5 136 aa4.01□□□□□ -1.77
COMMD4-208ENST00000563220 MUC5ACP98088 5654 aa4□□□□□ -1.77
COMMD4-208ENST00000563220 GPR98Q8WXG9 6306 aa3.98□□□□□ -1.77
COMMD4-208ENST00000563220 LCE1CQ5T751 118 aa3.97□□□□□ -1.77
COMMD4-208ENST00000563220 KRTAP5-7Q6L8G8 165 aa3.97□□□□□ -1.77
COMMD4-208ENST00000563220 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.71□□□□□ -1.82
COMMD4-208ENST00000563220 KRTAP9-9Q9BYP9 154 aa3.68□□□□□ -1.82
COMMD4-208ENST00000563220 MUC5BQ9HC84 5762 aaPredicted RBP3.56□□□□□ -1.84
COMMD4-208ENST00000563220 KRTAP21-2Q3LI59 83 aa3.55□□□□□ -1.84
COMMD4-208ENST00000563220 KRTAP5-11Q6L8G4 156 aa3.5□□□□□ -1.85
COMMD4-208ENST00000563220 KRTAP4-12Q9BQ66 201 aa3.36□□□□□ -1.87
COMMD4-208ENST00000563220 AHNAKQ09666 5890 aaKnown RBP3.22□□□□□ -1.89
COMMD4-208ENST00000563220 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
COMMD4-208ENST00000563220 LCE1FQ5T754 118 aa3.12□□□□□ -1.91
COMMD4-208ENST00000563220 PHGR1C9JFL3 82 aa3.01□□□□□ -1.93
COMMD4-208ENST00000563220 KRTAP21-1Q3LI58 79 aa2.77□□□□□ -1.97
COMMD4-208ENST00000563220 MUC19Q7Z5P9 8384 aa2.74□□□□□ -1.97
COMMD4-208ENST00000563220 MUC16Q8WXI7 14507 aa1.96□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 11 ms