RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 SPRR5A0A1B0GTR4 108 aa4.74□□□□□ -1.65
SNX1-211ENST00000560829 KRTAP4-2Q9BYR5 136 aa4.72□□□□□ -1.65
SNX1-211ENST00000560829 KRTAP4-9Q9BYQ8 210 aa4.7□□□□□ -1.66
SNX1-211ENST00000560829 CRCT1Q9UGL9 99 aa4.69□□□□□ -1.66
SNX1-211ENST00000560829 MT1EP04732 61 aa4.67□□□□□ -1.66
SNX1-211ENST00000560829 KRTAP5-3Q6L8H2 238 aa4.65□□□□□ -1.66
SNX1-211ENST00000560829 MACF1Q9UPN3 7388 aaKnown RBP4.65□□□□□ -1.66
SNX1-211ENST00000560829 KRTAP19-4Q3LI73 84 aa4.62□□□□□ -1.67
SNX1-211ENST00000560829 LCE3CQ5T5A8 94 aa4.58□□□□□ -1.68
SNX1-211ENST00000560829 MT1LQ93083 61 aa4.58□□□□□ -1.68
SNX1-211ENST00000560829 LUZP6Q538Z0 58 aa4.57□□□□□ -1.68
SNX1-211ENST00000560829 NDUFAF8A1L188 74 aa4.54□□□□□ -1.68
SNX1-211ENST00000560829 MUC12Q9UKN1 5478 aa4.51□□□□□ -1.69
SNX1-211ENST00000560829 SYNE2Q8WXH0 6885 aaKnown RBP4.51□□□□□ -1.69
SNX1-211ENST00000560829 SPRR2FQ96RM1 72 aa4.47□□□□□ -1.69
SNX1-211ENST00000560829 KRTAP19-3Q7Z4W3 81 aa4.46□□□□□ -1.7
SNX1-211ENST00000560829 MT1GP13640 62 aa4.43□□□□□ -1.7
SNX1-211ENST00000560829 KRTAP5-9P26371 169 aa4.43□□□□□ -1.7
SNX1-211ENST00000560829 KRTAP4-11Q9BYQ6 195 aa4.43□□□□□ -1.7
SNX1-211ENST00000560829 LCE5AQ5TCM9 118 aa4.38□□□□□ -1.71
SNX1-211ENST00000560829 MT1MQ8N339 61 aa4.38□□□□□ -1.71
SNX1-211ENST00000560829 MDN1Q9NU22 5596 aa4.37□□□□□ -1.71
SNX1-211ENST00000560829 KRTAP9-6A8MVA2 160 aa4.35□□□□□ -1.71
SNX1-211ENST00000560829 KRTAP6-3Q3LI67 103 aa4.29□□□□□ -1.72
SNX1-211ENST00000560829 LCE1AQ5T7P2 110 aa4.29□□□□□ -1.72
SNX1-211ENST00000560829 KRTAP4-3Q9BYR4 195 aa4.28□□□□□ -1.72
SNX1-211ENST00000560829 SPRR2EP22531 72 aa4.21□□□□□ -1.74
SNX1-211ENST00000560829 SPRR2BP35325 72 aa4.21□□□□□ -1.74
SNX1-211ENST00000560829 SPRR2AP35326 72 aa4.21□□□□□ -1.74
SNX1-211ENST00000560829 DSTQ03001 7570 aaKnown RBP4.15□□□□□ -1.75
SNX1-211ENST00000560829 NEBP20929 6669 aa4.09□□□□□ -1.75
SNX1-211ENST00000560829 KRTAP2-3P0C7H8 128 aa4.08□□□□□ -1.76
SNX1-211ENST00000560829 KRTAP2-4Q9BYR9 128 aa4.08□□□□□ -1.76
SNX1-211ENST00000560829 KRTAP2-1Q9BYU5 128 aa4.08□□□□□ -1.76
SNX1-211ENST00000560829 KRTAP9-7A8MTY7 169 aa4.05□□□□□ -1.76
SNX1-211ENST00000560829 SPRR2DP22532 72 aa4.05□□□□□ -1.76
SNX1-211ENST00000560829 LCE4AQ5TA78 99 aa4.03□□□□□ -1.77
SNX1-211ENST00000560829 KRTAP5-5Q701N2 237 aaPredicted RBP3.96□□□□□ -1.77
SNX1-211ENST00000560829 MT1AP04731 61 aa3.9□□□□□ -1.78
SNX1-211ENST00000560829 KRTAP6-1Q3LI64 71 aa3.86□□□□□ -1.79
SNX1-211ENST00000560829 SYNE1Q8NF91 8797 aaKnown RBP3.81□□□□□ -1.8
SNX1-211ENST00000560829 INE1O15225 51 aa3.77□□□□□ -1.81
SNX1-211ENST00000560829 KRTAP5-4Q6L8H1 288 aa3.74□□□□□ -1.81
SNX1-211ENST00000560829 KRTAP2-2Q9BYT5 123 aa3.65□□□□□ -1.82
SNX1-211ENST00000560829 KRTAP12-4P60329 112 aa3.62□□□□□ -1.83
SNX1-211ENST00000560829 KRTAP20-1Q3LI63 56 aa3.6□□□□□ -1.83
SNX1-211ENST00000560829 MT3P25713 68 aa3.52□□□□□ -1.85
SNX1-211ENST00000560829 KRTAP6-2Q3LI66 62 aa3.52□□□□□ -1.85
SNX1-211ENST00000560829 MT4P47944 62 aa3.5□□□□□ -1.85
SNX1-211ENST00000560829 HMCN1Q96RW7 5635 aa3.5□□□□□ -1.85
SNX1-211ENST00000560829 KRTAP20-2Q3LI61 65 aa3.47□□□□□ -1.85
SNX1-211ENST00000560829 LCE3DQ9BYE3 92 aa3.45□□□□□ -1.86
SNX1-211ENST00000560829 KRTAP5-2Q701N4 177 aa3.41□□□□□ -1.86
SNX1-211ENST00000560829 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.39□□□□□ -1.87
SNX1-211ENST00000560829 LCE3EQ5T5B0 92 aa3.37□□□□□ -1.87
SNX1-211ENST00000560829 OBSCNQ5VST9 7968 aa3.28□□□□□ -1.88
SNX1-211ENST00000560829 AHNAK2Q8IVF2 5795 aa3.06□□□□□ -1.92
SNX1-211ENST00000560829 LCE1EQ5T753 118 aa3.06□□□□□ -1.92
SNX1-211ENST00000560829 LCE1FQ5T754 118 aa3.02□□□□□ -1.93
SNX1-211ENST00000560829 PRM1P04553 51 aa2.98□□□□□ -1.93
SNX1-211ENST00000560829 KRTAP5-11Q6L8G4 156 aa2.96□□□□□ -1.94
SNX1-211ENST00000560829 KRTAP5-1Q6L8H4 278 aa2.93□□□□□ -1.94
SNX1-211ENST00000560829 MUC5ACP98088 5654 aa2.91□□□□□ -1.94
SNX1-211ENST00000560829 KRTAP5-10Q6L8G5 202 aa2.9□□□□□ -1.95
SNX1-211ENST00000560829 KRTAP5-8O75690 187 aa2.88□□□□□ -1.95
SNX1-211ENST00000560829 LCE1CQ5T751 118 aa2.85□□□□□ -1.95
SNX1-211ENST00000560829 LCE1BQ5T7P3 118 aa2.85□□□□□ -1.95
SNX1-211ENST00000560829 KRTAP5-7Q6L8G8 165 aa2.83□□□□□ -1.96
SNX1-211ENST00000560829 KRTAP4-4Q9BYR3 166 aa2.77□□□□□ -1.97
SNX1-211ENST00000560829 GPR98Q8WXG9 6306 aa2.73□□□□□ -1.97
SNX1-211ENST00000560829 KRTAP21-2Q3LI59 83 aa2.54□□□□□ -2
SNX1-211ENST00000560829 MUC5BQ9HC84 5762 aaPredicted RBP2.51□□□□□ -2.01
SNX1-211ENST00000560829 AHNAKQ09666 5890 aaKnown RBP2.32□□□□□ -2.04
SNX1-211ENST00000560829 PHGR1C9JFL3 82 aa2.14□□□□□ -2.07
SNX1-211ENST00000560829 MUC19Q7Z5P9 8384 aa1.94□□□□□ -2.1
SNX1-211ENST00000560829 KRTAP21-1Q3LI58 79 aa1.86□□□□□ -2.11
SNX1-211ENST00000560829 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 75.8 ms