RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 KRTAP15-1Q3LI76 137 aa4.39□□□□□ -1.71
HERC1-205ENST00000559886 MT1LQ93083 61 aa4.35□□□□□ -1.71
HERC1-205ENST00000559886 MDN1Q9NU22 5596 aa4.32□□□□□ -1.72
HERC1-205ENST00000559886 KRTAP19-3Q7Z4W3 81 aa4.32□□□□□ -1.72
HERC1-205ENST00000559886 LCE1AQ5T7P2 110 aa4.3□□□□□ -1.72
HERC1-205ENST00000559886 SPRR2EP22531 72 aa4.28□□□□□ -1.72
HERC1-205ENST00000559886 SPRR2BP35325 72 aa4.28□□□□□ -1.72
HERC1-205ENST00000559886 SPRR2AP35326 72 aa4.28□□□□□ -1.72
HERC1-205ENST00000559886 MT1GP13640 62 aa4.27□□□□□ -1.73
HERC1-205ENST00000559886 KRTAP19-4Q3LI73 84 aa4.27□□□□□ -1.73
HERC1-205ENST00000559886 LCE5AQ5TCM9 118 aa4.27□□□□□ -1.73
HERC1-205ENST00000559886 LOC100996750A0A140TA64 210 aa4.22□□□□□ -1.73
HERC1-205ENST00000559886 KRTAP4-6Q9BYQ5 205 aa4.22□□□□□ -1.73
HERC1-205ENST00000559886 LCE3CQ5T5A8 94 aa4.21□□□□□ -1.73
HERC1-205ENST00000559886 MT1MQ8N339 61 aa4.21□□□□□ -1.74
HERC1-205ENST00000559886 NEBP20929 6669 aa4.18□□□□□ -1.74
HERC1-205ENST00000559886 KRTAP4-7Q9BYR0 210 aa4.18□□□□□ -1.74
HERC1-205ENST00000559886 SPRR2DP22532 72 aa4.12□□□□□ -1.75
HERC1-205ENST00000559886 KRTAP4-3Q9BYR4 195 aa4.11□□□□□ -1.75
HERC1-205ENST00000559886 SPRR5A0A1B0GTR4 108 aa4.08□□□□□ -1.76
HERC1-205ENST00000559886 DSTQ03001 7570 aaKnown RBP4.04□□□□□ -1.76
HERC1-205ENST00000559886 KRTAP9-6A8MVA2 160 aa3.99□□□□□ -1.77
HERC1-205ENST00000559886 LCE3BQ5TA77 95 aa3.97□□□□□ -1.77
HERC1-205ENST00000559886 KRTAP2-3P0C7H8 128 aa3.93□□□□□ -1.78
HERC1-205ENST00000559886 KRTAP2-4Q9BYR9 128 aa3.93□□□□□ -1.78
HERC1-205ENST00000559886 KRTAP20-1Q3LI63 56 aa3.88□□□□□ -1.79
HERC1-205ENST00000559886 LUZP6Q538Z0 58 aa3.84□□□□□ -1.8
HERC1-205ENST00000559886 KRTAP2-2Q9BYT5 123 aa3.84□□□□□ -1.8
HERC1-205ENST00000559886 KRTAP2-1Q9BYU5 128 aa3.84□□□□□ -1.8
HERC1-205ENST00000559886 KRTAP5-5Q701N2 237 aaPredicted RBP3.82□□□□□ -1.8
HERC1-205ENST00000559886 A0A0A0MQY5 61 aa3.8□□□□□ -1.8
HERC1-205ENST00000559886 KRTAP5-4Q6L8H1 288 aa3.72□□□□□ -1.81
HERC1-205ENST00000559886 MT1AP04731 61 aa3.7□□□□□ -1.82
HERC1-205ENST00000559886 LCE4AQ5TA78 99 aa3.67□□□□□ -1.82
HERC1-205ENST00000559886 KRTAP6-1Q3LI64 71 aa3.66□□□□□ -1.82
HERC1-205ENST00000559886 NDUFAF8A1L188 74 aa3.64□□□□□ -1.83
HERC1-205ENST00000559886 SYNE1Q8NF91 8797 aaKnown RBP3.62□□□□□ -1.83
HERC1-205ENST00000559886 MT4P47944 62 aa3.58□□□□□ -1.84
HERC1-205ENST00000559886 KRTAP12-4P60329 112 aa3.58□□□□□ -1.84
HERC1-205ENST00000559886 KRTAP4-9Q9BYQ8 210 aa3.58□□□□□ -1.84
HERC1-205ENST00000559886 LCE1DQ5T752 114 aa3.55□□□□□ -1.84
HERC1-205ENST00000559886 KRTAP9-4Q9BYQ2 154 aa3.53□□□□□ -1.84
HERC1-205ENST00000559886 HMCN1Q96RW7 5635 aa3.5□□□□□ -1.85
HERC1-205ENST00000559886 KRTAP20-2Q3LI61 65 aa3.47□□□□□ -1.85
HERC1-205ENST00000559886 KRTAP6-2Q3LI66 62 aa3.4□□□□□ -1.87
HERC1-205ENST00000559886 KRTAP5-3Q6L8H2 238 aa3.4□□□□□ -1.87
HERC1-205ENST00000559886 MT3P25713 68 aa3.36□□□□□ -1.87
HERC1-205ENST00000559886 KRTAP5-2Q701N4 177 aa3.35□□□□□ -1.87
HERC1-205ENST00000559886 KRTAP9-9Q9BYP9 154 aa3.33□□□□□ -1.88
HERC1-205ENST00000559886 KRTAP4-2Q9BYR5 136 aa3.23□□□□□ -1.89
HERC1-205ENST00000559886 KRTAP4-12Q9BQ66 201 aa3.22□□□□□ -1.89
HERC1-205ENST00000559886 AHNAK2Q8IVF2 5795 aa3.19□□□□□ -1.9
HERC1-205ENST00000559886 LCE3DQ9BYE3 92 aa3.14□□□□□ -1.91
HERC1-205ENST00000559886 OBSCNQ5VST9 7968 aa3.12□□□□□ -1.91
HERC1-205ENST00000559886 GPR98Q8WXG9 6306 aa3.1□□□□□ -1.91
HERC1-205ENST00000559886 KRTAP4-11Q9BYQ6 195 aa3.04□□□□□ -1.92
HERC1-205ENST00000559886 LCE3EQ5T5B0 92 aa3.03□□□□□ -1.92
HERC1-205ENST00000559886 KRTAP5-10Q6L8G5 202 aa3.03□□□□□ -1.92
HERC1-205ENST00000559886 INE1O15225 51 aa3□□□□□ -1.93
HERC1-205ENST00000559886 LCE1EQ5T753 118 aa2.97□□□□□ -1.93
HERC1-205ENST00000559886 KRTAP5-8O75690 187 aa2.94□□□□□ -1.94
HERC1-205ENST00000559886 KRTAP5-1Q6L8H4 278 aa2.92□□□□□ -1.94
HERC1-205ENST00000559886 KRTAP5-7Q6L8G8 165 aa2.83□□□□□ -1.96
HERC1-205ENST00000559886 MUC5ACP98088 5654 aa2.81□□□□□ -1.96
HERC1-205ENST00000559886 LCE1CQ5T751 118 aa2.76□□□□□ -1.97
HERC1-205ENST00000559886 LCE1BQ5T7P3 118 aa2.76□□□□□ -1.97
HERC1-205ENST00000559886 PRM1P04553 51 aa2.58□□□□□ -2
HERC1-205ENST00000559886 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.58□□□□□ -2
HERC1-205ENST00000559886 MUC5BQ9HC84 5762 aaPredicted RBP2.54□□□□□ -2
HERC1-205ENST00000559886 AHNAKQ09666 5890 aaKnown RBP2.45□□□□□ -2.02
HERC1-205ENST00000559886 LCE1FQ5T754 118 aa2.45□□□□□ -2.02
HERC1-205ENST00000559886 KRTAP5-11Q6L8G4 156 aa2.45□□□□□ -2.02
HERC1-205ENST00000559886 KRTAP21-2Q3LI59 83 aa2.41□□□□□ -2.02
HERC1-205ENST00000559886 KRTAP4-4Q9BYR3 166 aa2.13□□□□□ -2.07
HERC1-205ENST00000559886 PHGR1C9JFL3 82 aa2.1□□□□□ -2.07
HERC1-205ENST00000559886 MUC19Q7Z5P9 8384 aa1.89□□□□□ -2.11
HERC1-205ENST00000559886 KRTAP21-1Q3LI58 79 aa1.56□□□□□ -2.16
HERC1-205ENST00000559886 MUC16Q8WXI7 14507 aa1.37□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 90.1 ms