RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 SPATA8Q6RVD6 105 aa1.66□□□□□ -2.14
SPG11-211ENST00000558561 COA5Q86WW8 74 aa1.66□□□□□ -2.14
SPG11-211ENST00000558561 KRTAP8-1Q8IUC2 63 aa1.66□□□□□ -2.14
SPG11-211ENST00000558561 SPANXA2-OT1Q8N9U9 137 aa1.66□□□□□ -2.14
SPG11-211ENST00000558561 SMIM26A0A096LP01 95 aa1.65□□□□□ -2.15
SPG11-211ENST00000558561 H7BZZ5 65 aa1.65□□□□□ -2.15
SPG11-211ENST00000558561 SPRR2EP22531 72 aa1.65□□□□□ -2.15
SPG11-211ENST00000558561 SPRR2BP35325 72 aa1.65□□□□□ -2.15
SPG11-211ENST00000558561 SPRR2AP35326 72 aa1.65□□□□□ -2.15
SPG11-211ENST00000558561 A0A0D9SG42 100 aa1.64□□□□□ -2.15
SPG11-211ENST00000558561 CCDC179H3BU77 68 aa1.64□□□□□ -2.15
SPG11-211ENST00000558561 KRTAP20-1Q3LI63 56 aa1.64□□□□□ -2.15
SPG11-211ENST00000558561 PRO2289Q9P1D8 64 aa1.63□□□□□ -2.15
SPG11-211ENST00000558561 MDN1Q9NU22 5596 aa1.63□□□□□ -2.15
SPG11-211ENST00000558561 SPTSSBQ8NFR3 76 aa1.62□□□□□ -2.15
SPG11-211ENST00000558561 KRTAP2-3P0C7H8 128 aa1.61□□□□□ -2.15
SPG11-211ENST00000558561 KRTAP2-4Q9BYR9 128 aa1.61□□□□□ -2.15
SPG11-211ENST00000558561 KRTAP12-1P59990 96 aa1.6□□□□□ -2.15
SPG11-211ENST00000558561 KRTAP19-7Q3SYF9 63 aa1.6□□□□□ -2.15
SPG11-211ENST00000558561 SPINT4Q6UDR6 99 aa1.6□□□□□ -2.15
SPG11-211ENST00000558561 A0A1B0GU33 70 aa1.59□□□□□ -2.15
SPG11-211ENST00000558561 ANAPC13Q9BS18 74 aa1.59□□□□□ -2.15
SPG11-211ENST00000558561 SPRR2DP22532 72 aa1.58□□□□□ -2.16
SPG11-211ENST00000558561 C10orf95Q9H7T3 257 aa1.57□□□□□ -2.16
SPG11-211ENST00000558561 SERP1Q9Y6X1 66 aa1.57□□□□□ -2.16
SPG11-211ENST00000558561 MT1EP04732 61 aa1.56□□□□□ -2.16
SPG11-211ENST00000558561 KRTAP19-5Q3LI72 72 aa1.56□□□□□ -2.16
SPG11-211ENST00000558561 LUZP6Q538Z0 58 aa1.56□□□□□ -2.16
SPG11-211ENST00000558561 KRTAP2-1Q9BYU5 128 aa1.56□□□□□ -2.16
SPG11-211ENST00000558561 DSTQ03001 7570 aaKnown RBP1.56□□□□□ -2.16
SPG11-211ENST00000558561 KRTAP5-7Q6L8G8 165 aa1.55□□□□□ -2.16
SPG11-211ENST00000558561 A0A1B0GU69 56 aa1.54□□□□□ -2.16
SPG11-211ENST00000558561 LINC01558Q9Y6Z2 57 aa1.52□□□□□ -2.17
SPG11-211ENST00000558561 MUC19Q7Z5P9 8384 aa1.51□□□□□ -2.17
SPG11-211ENST00000558561 KRTAP12-3P60328 96 aa1.51□□□□□ -2.17
SPG11-211ENST00000558561 KRTAP19-3Q7Z4W3 81 aa1.51□□□□□ -2.17
SPG11-211ENST00000558561 MT1LQ93083 61 aa1.5□□□□□ -2.17
SPG11-211ENST00000558561 MT1MQ8N339 61 aa1.49□□□□□ -2.17
SPG11-211ENST00000558561 MT1GP13640 62 aa1.48□□□□□ -2.17
SPG11-211ENST00000558561 PSPHP1O15172 72 aa1.47□□□□□ -2.17
SPG11-211ENST00000558561 PRR15LQ9BU68 103 aa1.47□□□□□ -2.17
SPG11-211ENST00000558561 KRTAP12-4P60329 112 aa1.46□□□□□ -2.18
SPG11-211ENST00000558561 TMEM258P61165 79 aa1.46□□□□□ -2.18
SPG11-211ENST00000558561 TNP1P09430 55 aa1.45□□□□□ -2.18
SPG11-211ENST00000558561 ATP5EP56381 51 aaPredicted RBP1.45□□□□□ -2.18
SPG11-211ENST00000558561 UQCR11O14957 56 aa1.43□□□□□ -2.18
SPG11-211ENST00000558561 MT4P47944 62 aa1.43□□□□□ -2.18
SPG11-211ENST00000558561 MIR22HGQ0VDD5 57 aa1.43□□□□□ -2.18
SPG11-211ENST00000558561 Q1T7F1 81 aa1.41□□□□□ -2.18
SPG11-211ENST00000558561 SYNE1Q8NF91 8797 aaKnown RBP1.41□□□□□ -2.18
SPG11-211ENST00000558561 KRTAP25-1Q3LHN0 102 aa1.38□□□□□ -2.19
SPG11-211ENST00000558561 A6NED7 52 aa1.35□□□□□ -2.19
SPG11-211ENST00000558561 PRO0628Q9UI54 55 aa1.35□□□□□ -2.19
SPG11-211ENST00000558561 RPS28P62857 69 aaKnown RBP1.34□□□□□ -2.19
SPG11-211ENST00000558561 V9GYY9 64 aa1.34□□□□□ -2.19
SPG11-211ENST00000558561 GPR98Q8WXG9 6306 aa1.34□□□□□ -2.2
SPG11-211ENST00000558561 HMCN1Q96RW7 5635 aa1.33□□□□□ -2.2
SPG11-211ENST00000558561 KRTAP21-2Q3LI59 83 aa1.32□□□□□ -2.2
SPG11-211ENST00000558561 KRTAP20-2Q3LI61 65 aa1.32□□□□□ -2.2
SPG11-211ENST00000558561 K7ERS5 55 aa1.31□□□□□ -2.2
SPG11-211ENST00000558561 KRTAP5-10Q6L8G5 202 aa1.31□□□□□ -2.2
SPG11-211ENST00000558561 ROMO1P60602 79 aa1.3□□□□□ -2.2
SPG11-211ENST00000558561 AHNAK2Q8IVF2 5795 aa1.3□□□□□ -2.2
SPG11-211ENST00000558561 KRTAP6-1Q3LI64 71 aa1.29□□□□□ -2.2
SPG11-211ENST00000558561 CDC42SE1Q9NRR8 79 aa1.28□□□□□ -2.2
SPG11-211ENST00000558561 MT1AP04731 61 aa1.25□□□□□ -2.21
SPG11-211ENST00000558561 KRTAP6-2Q3LI66 62 aa1.22□□□□□ -2.21
SPG11-211ENST00000558561 BRK1Q8WUW1 75 aa1.17□□□□□ -2.22
SPG11-211ENST00000558561 PMAIP1Q13794 54 aa1.1□□□□□ -2.23
SPG11-211ENST00000558561 MUC5BQ9HC84 5762 aaPredicted RBP1.05□□□□□ -2.24
SPG11-211ENST00000558561 MUC5ACP98088 5654 aa1.04□□□□□ -2.24
SPG11-211ENST00000558561 AHNAKQ09666 5890 aaKnown RBP1.02□□□□□ -2.25
SPG11-211ENST00000558561 KTN1-AS1Q86SY8 53 aa0.94□□□□□ -2.26
SPG11-211ENST00000558561 PHGR1C9JFL3 82 aa0.75□□□□□ -2.29
SPG11-211ENST00000558561 MUC16Q8WXI7 14507 aa0.72□□□□□ -2.29
SPG11-211ENST00000558561 PRM1P04553 51 aa0.7□□□□□ -2.3
SPG11-211ENST00000558561 INE1O15225 51 aa0.55□□□□□ -2.32
SPG11-211ENST00000558561 KRTAP21-1Q3LI58 79 aa0.52□□□□□ -2.33
Retrieved 78 of 20,778 RNA–protein pairs in 6.1 ms