RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 KRTAP19-5Q3LI72 72 aa6.29□□□□□ -1.4
SNX1-203ENST00000558040 KRTAP6-3Q3LI67 103 aa6.27□□□□□ -1.41
SNX1-203ENST00000558040 KRTAP12-3P60328 96 aa6.26□□□□□ -1.41
SNX1-203ENST00000558040 KRTAP19-7Q3SYF9 63 aa6.26□□□□□ -1.41
SNX1-203ENST00000558040 KRTAP5-9P26371 169 aa6.25□□□□□ -1.41
SNX1-203ENST00000558040 KRTAP19-4Q3LI73 84 aa6.25□□□□□ -1.41
SNX1-203ENST00000558040 SPRR2FQ96RM1 72 aa6.25□□□□□ -1.41
SNX1-203ENST00000558040 KRTAP4-9Q9BYQ8 210 aa6.2□□□□□ -1.42
SNX1-203ENST00000558040 MT1EP04732 61 aa6.18□□□□□ -1.42
SNX1-203ENST00000558040 SVIPQ8NHG7 77 aa6.12□□□□□ -1.43
SNX1-203ENST00000558040 KRTAP15-1Q3LI76 137 aa6.08□□□□□ -1.44
SNX1-203ENST00000558040 KRTAP4-2Q9BYR5 136 aa6.07□□□□□ -1.44
SNX1-203ENST00000558040 MT1LQ93083 61 aa6.02□□□□□ -1.45
SNX1-203ENST00000558040 SPRR2EP22531 72 aa6.01□□□□□ -1.45
SNX1-203ENST00000558040 SPRR2BP35325 72 aa6.01□□□□□ -1.45
SNX1-203ENST00000558040 SPRR2AP35326 72 aa6.01□□□□□ -1.45
SNX1-203ENST00000558040 KRTAP19-3Q7Z4W3 81 aa6.01□□□□□ -1.45
SNX1-203ENST00000558040 KRTAP4-11Q9BYQ6 195 aa6□□□□□ -1.45
SNX1-203ENST00000558040 LCE1AQ5T7P2 110 aa5.99□□□□□ -1.45
SNX1-203ENST00000558040 MUC12Q9UKN1 5478 aa5.99□□□□□ -1.45
SNX1-203ENST00000558040 LCE5AQ5TCM9 118 aa5.97□□□□□ -1.45
SNX1-203ENST00000558040 MT1GP13640 62 aa5.94□□□□□ -1.46
SNX1-203ENST00000558040 NEBP20929 6669 aa5.93□□□□□ -1.46
SNX1-203ENST00000558040 MT1MQ8N339 61 aa5.84□□□□□ -1.47
SNX1-203ENST00000558040 MDN1Q9NU22 5596 aa5.84□□□□□ -1.48
SNX1-203ENST00000558040 LCE3CQ5T5A8 94 aa5.82□□□□□ -1.48
SNX1-203ENST00000558040 SPRR2DP22532 72 aa5.8□□□□□ -1.48
SNX1-203ENST00000558040 KRTAP4-3Q9BYR4 195 aa5.66□□□□□ -1.5
SNX1-203ENST00000558040 KRTAP20-1Q3LI63 56 aa5.58□□□□□ -1.52
SNX1-203ENST00000558040 SPRR5A0A1B0GTR4 108 aa5.56□□□□□ -1.52
SNX1-203ENST00000558040 KRTAP2-3P0C7H8 128 aa5.54□□□□□ -1.52
SNX1-203ENST00000558040 KRTAP2-4Q9BYR9 128 aa5.54□□□□□ -1.52
SNX1-203ENST00000558040 KRTAP5-3Q6L8H2 238 aa5.49□□□□□ -1.53
SNX1-203ENST00000558040 KRTAP9-6A8MVA2 160 aa5.43□□□□□ -1.54
SNX1-203ENST00000558040 KRTAP2-2Q9BYT5 123 aa5.41□□□□□ -1.54
SNX1-203ENST00000558040 KRTAP2-1Q9BYU5 128 aa5.41□□□□□ -1.54
SNX1-203ENST00000558040 DSTQ03001 7570 aaKnown RBP5.41□□□□□ -1.54
SNX1-203ENST00000558040 LUZP6Q538Z0 58 aa5.33□□□□□ -1.56
SNX1-203ENST00000558040 KRTAP5-5Q701N2 237 aaPredicted RBP5.28□□□□□ -1.56
SNX1-203ENST00000558040 KRTAP5-4Q6L8H1 288 aa5.17□□□□□ -1.58
SNX1-203ENST00000558040 MT1AP04731 61 aa5.15□□□□□ -1.59
SNX1-203ENST00000558040 KRTAP6-1Q3LI64 71 aa5.05□□□□□ -1.6
SNX1-203ENST00000558040 KRTAP12-4P60329 112 aa5.02□□□□□ -1.61
SNX1-203ENST00000558040 MT4P47944 62 aa5.01□□□□□ -1.61
SNX1-203ENST00000558040 NDUFAF8A1L188 74 aa4.95□□□□□ -1.62
SNX1-203ENST00000558040 KRTAP20-2Q3LI61 65 aa4.84□□□□□ -1.63
SNX1-203ENST00000558040 SYNE1Q8NF91 8797 aaKnown RBP4.83□□□□□ -1.64
SNX1-203ENST00000558040 GPR98Q8WXG9 6306 aa4.83□□□□□ -1.64
SNX1-203ENST00000558040 HMCN1Q96RW7 5635 aa4.77□□□□□ -1.65
SNX1-203ENST00000558040 KRTAP6-2Q3LI66 62 aa4.71□□□□□ -1.66
SNX1-203ENST00000558040 MT3P25713 68 aa4.69□□□□□ -1.66
SNX1-203ENST00000558040 KRTAP5-2Q701N4 177 aa4.64□□□□□ -1.67
SNX1-203ENST00000558040 AHNAK2Q8IVF2 5795 aa4.61□□□□□ -1.67
SNX1-203ENST00000558040 KRTAP5-10Q6L8G5 202 aa4.4□□□□□ -1.71
SNX1-203ENST00000558040 A0A0A0MQY5 61 aa4.35□□□□□ -1.71
SNX1-203ENST00000558040 LCE3DQ9BYE3 92 aa4.34□□□□□ -1.71
SNX1-203ENST00000558040 KRTAP5-7Q6L8G8 165 aa4.22□□□□□ -1.73
SNX1-203ENST00000558040 LCE3EQ5T5B0 92 aa4.2□□□□□ -1.74
SNX1-203ENST00000558040 OBSCNQ5VST9 7968 aa4.14□□□□□ -1.75
SNX1-203ENST00000558040 INE1O15225 51 aa4.13□□□□□ -1.75
SNX1-203ENST00000558040 LCE1EQ5T753 118 aa4.13□□□□□ -1.75
SNX1-203ENST00000558040 KRTAP5-8O75690 187 aa4.09□□□□□ -1.75
SNX1-203ENST00000558040 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.07□□□□□ -1.76
SNX1-203ENST00000558040 KRTAP5-11Q6L8G4 156 aa4.05□□□□□ -1.76
SNX1-203ENST00000558040 KRTAP5-1Q6L8H4 278 aa4.03□□□□□ -1.76
SNX1-203ENST00000558040 LCE1BQ5T7P3 118 aa3.85□□□□□ -1.79
SNX1-203ENST00000558040 MUC5BQ9HC84 5762 aaPredicted RBP3.83□□□□□ -1.8
SNX1-203ENST00000558040 LCE1CQ5T751 118 aa3.83□□□□□ -1.8
SNX1-203ENST00000558040 AHNAKQ09666 5890 aaKnown RBP3.81□□□□□ -1.8
SNX1-203ENST00000558040 MUC5ACP98088 5654 aa3.78□□□□□ -1.8
SNX1-203ENST00000558040 PRM1P04553 51 aa3.53□□□□□ -1.84
SNX1-203ENST00000558040 LCE1FQ5T754 118 aa3.49□□□□□ -1.85
SNX1-203ENST00000558040 KRTAP4-4Q9BYR3 166 aa3.41□□□□□ -1.86
SNX1-203ENST00000558040 KRTAP21-2Q3LI59 83 aa3.31□□□□□ -1.88
SNX1-203ENST00000558040 PHGR1C9JFL3 82 aa2.92□□□□□ -1.94
SNX1-203ENST00000558040 MUC19Q7Z5P9 8384 aa2.45□□□□□ -2.02
SNX1-203ENST00000558040 KRTAP21-1Q3LI58 79 aa2.11□□□□□ -2.07
SNX1-203ENST00000558040 MUC16Q8WXI7 14507 aa1.85□□□□□ -2.11
Retrieved 78 of 20,778 RNA–protein pairs in 81.7 ms