RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 OBSCNQ5VST9 7968 aa4.3□□□□□ -1.72
LDLR-205ENST00000557933 CRCT1Q9UGL9 99 aa4.27□□□□□ -1.73
LDLR-205ENST00000557933 LOC100996750A0A140TA64 210 aa4.25□□□□□ -1.73
LDLR-205ENST00000557933 KRTAP4-3Q9BYR4 195 aa4.24□□□□□ -1.73
LDLR-205ENST00000557933 MT1LQ93083 61 aa4.17□□□□□ -1.74
LDLR-205ENST00000557933 KRTAP2-3P0C7H8 128 aa4.16□□□□□ -1.74
LDLR-205ENST00000557933 KRTAP2-4Q9BYR9 128 aa4.16□□□□□ -1.74
LDLR-205ENST00000557933 KRTAP2-1Q9BYU5 128 aa4.16□□□□□ -1.74
LDLR-205ENST00000557933 MT1EP04732 61 aa4.14□□□□□ -1.75
LDLR-205ENST00000557933 MT1GP13640 62 aa4.11□□□□□ -1.75
LDLR-205ENST00000557933 KRTAP19-4Q3LI73 84 aa4.11□□□□□ -1.75
LDLR-205ENST00000557933 SYNE2Q8WXH0 6885 aaKnown RBP4.08□□□□□ -1.76
LDLR-205ENST00000557933 KRTAP9-6A0A140TA67 174 aa4.07□□□□□ -1.76
LDLR-205ENST00000557933 KRTAP5-9P26371 169 aa4.01□□□□□ -1.77
LDLR-205ENST00000557933 KRTAP4-9Q9BYQ8 210 aa3.95□□□□□ -1.78
LDLR-205ENST00000557933 KRTAP12-4P60329 112 aa3.94□□□□□ -1.78
LDLR-205ENST00000557933 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.94□□□□□ -1.78
LDLR-205ENST00000557933 MACF1Q9UPN3 7388 aaKnown RBP3.93□□□□□ -1.78
LDLR-205ENST00000557933 MDN1Q9NU22 5596 aa3.93□□□□□ -1.78
LDLR-205ENST00000557933 KRTAP6-3Q3LI67 103 aa3.92□□□□□ -1.78
LDLR-205ENST00000557933 LCE3BQ5TA77 95 aa3.9□□□□□ -1.79
LDLR-205ENST00000557933 MT1MQ8N339 61 aa3.87□□□□□ -1.79
LDLR-205ENST00000557933 KRTAP19-3Q7Z4W3 81 aa3.86□□□□□ -1.79
LDLR-205ENST00000557933 SPRR2FQ96RM1 72 aa3.85□□□□□ -1.79
LDLR-205ENST00000557933 LCE5AQ5TCM9 118 aa3.82□□□□□ -1.8
LDLR-205ENST00000557933 LCE1AQ5T7P2 110 aa3.79□□□□□ -1.8
LDLR-205ENST00000557933 KRTAP9-7A8MTY7 169 aa3.71□□□□□ -1.82
LDLR-205ENST00000557933 SPRR2EP22531 72 aa3.69□□□□□ -1.82
LDLR-205ENST00000557933 SPRR2BP35325 72 aa3.69□□□□□ -1.82
LDLR-205ENST00000557933 SPRR2AP35326 72 aa3.69□□□□□ -1.82
LDLR-205ENST00000557933 KRTAP6-1Q3LI64 71 aa3.65□□□□□ -1.83
LDLR-205ENST00000557933 SPRR2DP22532 72 aa3.57□□□□□ -1.84
LDLR-205ENST00000557933 PRM1P04553 51 aa3.54□□□□□ -1.84
LDLR-205ENST00000557933 LCE3DQ9BYE3 92 aa3.54□□□□□ -1.84
LDLR-205ENST00000557933 NEBP20929 6669 aa3.53□□□□□ -1.84
LDLR-205ENST00000557933 KRTAP5-5Q701N2 237 aaPredicted RBP3.48□□□□□ -1.85
LDLR-205ENST00000557933 LCE3EQ5T5B0 92 aa3.46□□□□□ -1.86
LDLR-205ENST00000557933 MT1AP04731 61 aa3.4□□□□□ -1.87
LDLR-205ENST00000557933 KRTAP5-4Q6L8H1 288 aa3.36□□□□□ -1.87
LDLR-205ENST00000557933 KRTAP6-2Q3LI66 62 aa3.35□□□□□ -1.87
LDLR-205ENST00000557933 KRTAP2-2Q9BYT5 123 aa3.33□□□□□ -1.88
LDLR-205ENST00000557933 KRTAP20-1Q3LI63 56 aa3.32□□□□□ -1.88
LDLR-205ENST00000557933 LCE4AQ5TA78 99 aa3.3□□□□□ -1.88
LDLR-205ENST00000557933 KRTAP9-4Q9BYQ2 154 aa3.2□□□□□ -1.9
LDLR-205ENST00000557933 KRTAP20-2Q3LI61 65 aa3.06□□□□□ -1.92
LDLR-205ENST00000557933 MT3P25713 68 aa3.06□□□□□ -1.92
LDLR-205ENST00000557933 LCE1DQ5T752 114 aa3.05□□□□□ -1.92
LDLR-205ENST00000557933 KRTAP5-2Q701N4 177 aa3.05□□□□□ -1.92
LDLR-205ENST00000557933 KRTAP4-6Q9BYQ5 205 aa3.03□□□□□ -1.92
LDLR-205ENST00000557933 MT4P47944 62 aa3.01□□□□□ -1.93
LDLR-205ENST00000557933 KRTAP5-3Q6L8H2 238 aa3□□□□□ -1.93
LDLR-205ENST00000557933 HMCN1Q96RW7 5635 aa2.96□□□□□ -1.94
LDLR-205ENST00000557933 MUC5ACP98088 5654 aa2.87□□□□□ -1.95
LDLR-205ENST00000557933 MUC19Q7Z5P9 8384 aa2.79□□□□□ -1.96
LDLR-205ENST00000557933 LCE1EQ5T753 118 aa2.79□□□□□ -1.96
LDLR-205ENST00000557933 KRTAP4-11Q9BYQ6 195 aa2.75□□□□□ -1.97
LDLR-205ENST00000557933 LCE1BQ5T7P3 118 aa2.74□□□□□ -1.97
LDLR-205ENST00000557933 AHNAK2Q8IVF2 5795 aa2.69□□□□□ -1.98
LDLR-205ENST00000557933 KRTAP5-10Q6L8G5 202 aa2.62□□□□□ -1.99
LDLR-205ENST00000557933 KRTAP5-7Q6L8G8 165 aa2.61□□□□□ -1.99
LDLR-205ENST00000557933 KRTAP5-8O75690 187 aa2.59□□□□□ -1.99
LDLR-205ENST00000557933 KRTAP5-1Q6L8H4 278 aa2.59□□□□□ -1.99
LDLR-205ENST00000557933 GPR98Q8WXG9 6306 aa2.56□□□□□ -2
LDLR-205ENST00000557933 LCE1CQ5T751 118 aa2.52□□□□□ -2.01
LDLR-205ENST00000557933 KRTAP4-2Q9BYR5 136 aa2.47□□□□□ -2.01
LDLR-205ENST00000557933 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.41□□□□□ -2.02
LDLR-205ENST00000557933 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
LDLR-205ENST00000557933 LCE1FQ5T754 118 aa2.4□□□□□ -2.02
LDLR-205ENST00000557933 MUC5BQ9HC84 5762 aaPredicted RBP2.37□□□□□ -2.03
LDLR-205ENST00000557933 KRTAP9-9Q9BYP9 154 aa2.3□□□□□ -2.04
LDLR-205ENST00000557933 KRTAP21-2Q3LI59 83 aa2.26□□□□□ -2.05
LDLR-205ENST00000557933 KRTAP5-11Q6L8G4 156 aa2.24□□□□□ -2.05
LDLR-205ENST00000557933 KRTAP4-12Q9BQ66 201 aa2.19□□□□□ -2.06
LDLR-205ENST00000557933 AHNAKQ09666 5890 aaKnown RBP2.05□□□□□ -2.08
LDLR-205ENST00000557933 KRTAP21-1Q3LI58 79 aa2.04□□□□□ -2.08
LDLR-205ENST00000557933 PHGR1C9JFL3 82 aa1.9□□□□□ -2.11
LDLR-205ENST00000557933 MUC16Q8WXI7 14507 aa1.26□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 102.8 ms