RNA–Protein interactions for RNA: ENST00000555038.5

ARHGEF40-204, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-204ENST00000555038 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.35□□□□□ -1.23
ARHGEF40-204ENST00000555038 KRTAP9-6A8MVA2 160 aa7.31□□□□□ -1.24
ARHGEF40-204ENST00000555038 MACF1Q9UPN3 7388 aaKnown RBP7.3□□□□□ -1.24
ARHGEF40-204ENST00000555038 KRTAP4-7Q9BYR0 210 aa7.27□□□□□ -1.25
ARHGEF40-204ENST00000555038 INE1O15225 51 aa7.23□□□□□ -1.25
ARHGEF40-204ENST00000555038 SYNE2Q8WXH0 6885 aaKnown RBP7.14□□□□□ -1.27
ARHGEF40-204ENST00000555038 KRTAP19-3Q7Z4W3 81 aa7.13□□□□□ -1.27
ARHGEF40-204ENST00000555038 MT1GP13640 62 aa7.12□□□□□ -1.27
ARHGEF40-204ENST00000555038 KRTAP9-7A8MTY7 169 aa7.1□□□□□ -1.27
ARHGEF40-204ENST00000555038 KRTAP2-3P0C7H8 128 aa7.08□□□□□ -1.28
ARHGEF40-204ENST00000555038 KRTAP2-4Q9BYR9 128 aa7.08□□□□□ -1.28
ARHGEF40-204ENST00000555038 KRTAP2-1Q9BYU5 128 aa7.08□□□□□ -1.28
ARHGEF40-204ENST00000555038 MT1MQ8N339 61 aa7.05□□□□□ -1.28
ARHGEF40-204ENST00000555038 KRTAP6-3Q3LI67 103 aa7.03□□□□□ -1.28
ARHGEF40-204ENST00000555038 MUC12Q9UKN1 5478 aa6.94□□□□□ -1.3
ARHGEF40-204ENST00000555038 KRTAP5-9P26371 169 aa6.93□□□□□ -1.3
ARHGEF40-204ENST00000555038 SPRR2FQ96RM1 72 aa6.92□□□□□ -1.3
ARHGEF40-204ENST00000555038 LCE5AQ5TCM9 118 aa6.92□□□□□ -1.3
ARHGEF40-204ENST00000555038 KRTAP4-3Q9BYR4 195 aa6.9□□□□□ -1.31
ARHGEF40-204ENST00000555038 LOC100996750A0A140TA64 210 aa6.8□□□□□ -1.32
ARHGEF40-204ENST00000555038 MDN1Q9NU22 5596 aa6.75□□□□□ -1.33
ARHGEF40-204ENST00000555038 NEBP20929 6669 aa6.66□□□□□ -1.34
ARHGEF40-204ENST00000555038 SPRR2EP22531 72 aa6.62□□□□□ -1.35
ARHGEF40-204ENST00000555038 SPRR2BP35325 72 aa6.62□□□□□ -1.35
ARHGEF40-204ENST00000555038 SPRR2AP35326 72 aa6.62□□□□□ -1.35
ARHGEF40-204ENST00000555038 LCE1AQ5T7P2 110 aa6.62□□□□□ -1.35
ARHGEF40-204ENST00000555038 DSTQ03001 7570 aaKnown RBP6.39□□□□□ -1.39
ARHGEF40-204ENST00000555038 SPRR2DP22532 72 aa6.39□□□□□ -1.39
ARHGEF40-204ENST00000555038 MT1AP04731 61 aa6.35□□□□□ -1.39
ARHGEF40-204ENST00000555038 KRTAP5-5Q701N2 237 aaPredicted RBP6.3□□□□□ -1.4
ARHGEF40-204ENST00000555038 KRTAP6-1Q3LI64 71 aa6.27□□□□□ -1.41
ARHGEF40-204ENST00000555038 KRTAP20-1Q3LI63 56 aa6.26□□□□□ -1.41
ARHGEF40-204ENST00000555038 LCE3BQ5TA77 95 aa6.23□□□□□ -1.41
ARHGEF40-204ENST00000555038 KRTAP12-4P60329 112 aa6.11□□□□□ -1.43
ARHGEF40-204ENST00000555038 KRTAP2-2Q9BYT5 123 aa6.07□□□□□ -1.44
ARHGEF40-204ENST00000555038 KRTAP9-4Q9BYQ2 154 aa5.98□□□□□ -1.45
ARHGEF40-204ENST00000555038 SYNE1Q8NF91 8797 aaKnown RBP5.97□□□□□ -1.45
ARHGEF40-204ENST00000555038 KRTAP4-9Q9BYQ8 210 aa5.95□□□□□ -1.46
ARHGEF40-204ENST00000555038 LCE3DQ9BYE3 92 aa5.91□□□□□ -1.46
ARHGEF40-204ENST00000555038 LCE3EQ5T5B0 92 aa5.83□□□□□ -1.48
ARHGEF40-204ENST00000555038 MT3P25713 68 aa5.73□□□□□ -1.49
ARHGEF40-204ENST00000555038 KRTAP5-4Q6L8H1 288 aa5.73□□□□□ -1.49
ARHGEF40-204ENST00000555038 KRTAP6-2Q3LI66 62 aa5.67□□□□□ -1.5
ARHGEF40-204ENST00000555038 LCE4AQ5TA78 99 aa5.67□□□□□ -1.5
ARHGEF40-204ENST00000555038 MT4P47944 62 aa5.55□□□□□ -1.52
ARHGEF40-204ENST00000555038 LCE1DQ5T752 114 aa5.55□□□□□ -1.52
ARHGEF40-204ENST00000555038 HMCN1Q96RW7 5635 aa5.5□□□□□ -1.53
ARHGEF40-204ENST00000555038 KRTAP4-6Q9BYQ5 205 aa5.47□□□□□ -1.53
ARHGEF40-204ENST00000555038 PRM1P04553 51 aa5.34□□□□□ -1.55
ARHGEF40-204ENST00000555038 KRTAP20-2Q3LI61 65 aa5.33□□□□□ -1.56
ARHGEF40-204ENST00000555038 KRTAP5-2Q701N4 177 aa5.32□□□□□ -1.56
ARHGEF40-204ENST00000555038 OBSCNQ5VST9 7968 aa5.2□□□□□ -1.58
ARHGEF40-204ENST00000555038 KRTAP5-3Q6L8H2 238 aa5.16□□□□□ -1.58
ARHGEF40-204ENST00000555038 AHNAK2Q8IVF2 5795 aa5.1□□□□□ -1.59
ARHGEF40-204ENST00000555038 GPR98Q8WXG9 6306 aa5.01□□□□□ -1.61
ARHGEF40-204ENST00000555038 KRTAP5-10Q6L8G5 202 aa4.89□□□□□ -1.63
ARHGEF40-204ENST00000555038 LCE1EQ5T753 118 aa4.85□□□□□ -1.63
ARHGEF40-204ENST00000555038 KRTAP4-11Q9BYQ6 195 aa4.73□□□□□ -1.65
ARHGEF40-204ENST00000555038 MUC5ACP98088 5654 aa4.69□□□□□ -1.66
ARHGEF40-204ENST00000555038 KRTAP5-7Q6L8G8 165 aa4.62□□□□□ -1.67
ARHGEF40-204ENST00000555038 KRTAP5-8O75690 187 aa4.57□□□□□ -1.68
ARHGEF40-204ENST00000555038 LCE1CQ5T751 118 aa4.52□□□□□ -1.69
ARHGEF40-204ENST00000555038 LCE1BQ5T7P3 118 aa4.52□□□□□ -1.69
ARHGEF40-204ENST00000555038 KRTAP5-1Q6L8H4 278 aa4.48□□□□□ -1.69
ARHGEF40-204ENST00000555038 KRTAP4-2Q9BYR5 136 aa4.46□□□□□ -1.7
ARHGEF40-204ENST00000555038 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.3□□□□□ -1.72
ARHGEF40-204ENST00000555038 KRTAP9-9Q9BYP9 154 aa4.22□□□□□ -1.73
ARHGEF40-204ENST00000555038 MUC5BQ9HC84 5762 aaPredicted RBP4.13□□□□□ -1.75
ARHGEF40-204ENST00000555038 KRTAP21-2Q3LI59 83 aa4.09□□□□□ -1.75
ARHGEF40-204ENST00000555038 AHNAKQ09666 5890 aaKnown RBP4.05□□□□□ -1.76
ARHGEF40-204ENST00000555038 KRTAP5-11Q6L8G4 156 aa3.93□□□□□ -1.78
ARHGEF40-204ENST00000555038 KRTAP4-12Q9BQ66 201 aa3.58□□□□□ -1.84
ARHGEF40-204ENST00000555038 KRTAP4-4Q9BYR3 166 aa3.56□□□□□ -1.84
ARHGEF40-204ENST00000555038 LCE1FQ5T754 118 aa3.45□□□□□ -1.86
ARHGEF40-204ENST00000555038 KRTAP21-1Q3LI58 79 aa3.4□□□□□ -1.87
ARHGEF40-204ENST00000555038 PHGR1C9JFL3 82 aa3.35□□□□□ -1.87
ARHGEF40-204ENST00000555038 MUC19Q7Z5P9 8384 aa3.12□□□□□ -1.91
ARHGEF40-204ENST00000555038 MUC16Q8WXI7 14507 aa2.25□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 5.3 ms