RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SPRR2DP22532 72 aa4.63□□□□□ -1.67
SHMT2-216ENST00000554975 GPR98Q8WXG9 6306 aa4.62□□□□□ -1.67
SHMT2-216ENST00000554975 LCE3BQ5TA77 95 aa4.55□□□□□ -1.68
SHMT2-216ENST00000554975 KRTAP8-1Q8IUC2 63 aa4.55□□□□□ -1.68
SHMT2-216ENST00000554975 PRO2289Q9P1D8 64 aa4.52□□□□□ -1.69
SHMT2-216ENST00000554975 LUZP6Q538Z0 58 aa4.47□□□□□ -1.69
SHMT2-216ENST00000554975 NDUFAF8A1L188 74 aa4.46□□□□□ -1.7
SHMT2-216ENST00000554975 MT1XP80297 61 aa4.46□□□□□ -1.7
SHMT2-216ENST00000554975 KRTAP4-8A0A0G2JLE6 195 aa4.45□□□□□ -1.7
SHMT2-216ENST00000554975 KRTAP4-8Q9BYQ9 185 aa4.45□□□□□ -1.7
SHMT2-216ENST00000554975 DSTQ03001 7570 aaKnown RBP4.42□□□□□ -1.7
SHMT2-216ENST00000554975 KRTAP4-9Q9BYQ8 210 aa4.41□□□□□ -1.7
SHMT2-216ENST00000554975 LCE3AQ5TA76 89 aa4.38□□□□□ -1.71
SHMT2-216ENST00000554975 KRTAP10-12P60413 245 aa4.37□□□□□ -1.71
SHMT2-216ENST00000554975 SPRR5A0A1B0GTR4 108 aa4.34□□□□□ -1.71
SHMT2-216ENST00000554975 KRTAP10-7P60409 375 aaPredicted RBP4.27□□□□□ -1.73
SHMT2-216ENST00000554975 KRTAP12-3P60328 96 aa4.24□□□□□ -1.73
SHMT2-216ENST00000554975 LCE1DQ5T752 114 aa4.23□□□□□ -1.73
SHMT2-216ENST00000554975 HMCN1Q96RW7 5635 aa4.19□□□□□ -1.74
SHMT2-216ENST00000554975 AHNAK2Q8IVF2 5795 aa4.18□□□□□ -1.74
SHMT2-216ENST00000554975 KRTAP5-10Q6L8G5 202 aa4.18□□□□□ -1.74
SHMT2-216ENST00000554975 A0A0A0MQY5 61 aa4.15□□□□□ -1.75
SHMT2-216ENST00000554975 MT4P47944 62 aa4.12□□□□□ -1.75
SHMT2-216ENST00000554975 KRTAP19-4Q3LI73 84 aa4.11□□□□□ -1.75
SHMT2-216ENST00000554975 LCE5AQ5TCM9 118 aa4.1□□□□□ -1.75
SHMT2-216ENST00000554975 KRTAP5-7Q6L8G8 165 aa4.06□□□□□ -1.76
SHMT2-216ENST00000554975 KRTAP19-5Q3LI72 72 aa4.03□□□□□ -1.76
SHMT2-216ENST00000554975 LCE4AQ5TA78 99 aa4.03□□□□□ -1.76
SHMT2-216ENST00000554975 KRTAP19-3Q7Z4W3 81 aa4.01□□□□□ -1.77
SHMT2-216ENST00000554975 KRTAP19-7Q3SYF9 63 aa4□□□□□ -1.77
SHMT2-216ENST00000554975 MT1EP04732 61 aa3.97□□□□□ -1.77
SHMT2-216ENST00000554975 KRTAP4-6Q9BYQ5 205 aa3.97□□□□□ -1.77
SHMT2-216ENST00000554975 LCE3CQ5T5A8 94 aa3.96□□□□□ -1.78
SHMT2-216ENST00000554975 KRTAP5-3Q6L8H2 238 aa3.96□□□□□ -1.78
SHMT2-216ENST00000554975 KRTAP5-4Q6L8H1 288 aa3.92□□□□□ -1.78
SHMT2-216ENST00000554975 MT1GP13640 62 aa3.83□□□□□ -1.8
SHMT2-216ENST00000554975 INE1O15225 51 aa3.82□□□□□ -1.8
SHMT2-216ENST00000554975 MT1LQ93083 61 aa3.82□□□□□ -1.8
SHMT2-216ENST00000554975 KRTAP4-3Q9BYR4 195 aa3.82□□□□□ -1.8
SHMT2-216ENST00000554975 MT1MQ8N339 61 aa3.81□□□□□ -1.8
SHMT2-216ENST00000554975 KRTAP20-2Q3LI61 65 aa3.74□□□□□ -1.81
SHMT2-216ENST00000554975 LOC100996750A0A140TA64 210 aa3.68□□□□□ -1.82
SHMT2-216ENST00000554975 KRTAP9-6A8MVA2 160 aa3.65□□□□□ -1.83
SHMT2-216ENST00000554975 KRTAP4-7Q9BYR0 210 aa3.63□□□□□ -1.83
SHMT2-216ENST00000554975 KRTAP5-5Q701N2 237 aaPredicted RBP3.56□□□□□ -1.84
SHMT2-216ENST00000554975 KRTAP4-12Q9BQ66 201 aa3.54□□□□□ -1.84
SHMT2-216ENST00000554975 MUC5ACP98088 5654 aa3.53□□□□□ -1.84
SHMT2-216ENST00000554975 KRTAP4-11Q9BYQ6 195 aa3.51□□□□□ -1.85
SHMT2-216ENST00000554975 MUC5BQ9HC84 5762 aaPredicted RBP3.51□□□□□ -1.85
SHMT2-216ENST00000554975 KRTAP12-4P60329 112 aa3.5□□□□□ -1.85
SHMT2-216ENST00000554975 AHNAKQ09666 5890 aaKnown RBP3.5□□□□□ -1.85
SHMT2-216ENST00000554975 KRTAP5-8O75690 187 aa3.46□□□□□ -1.86
SHMT2-216ENST00000554975 SYNE1Q8NF91 8797 aaKnown RBP3.44□□□□□ -1.86
SHMT2-216ENST00000554975 KRTAP9-4Q9BYQ2 154 aa3.38□□□□□ -1.87
SHMT2-216ENST00000554975 KRTAP5-2Q701N4 177 aa3.35□□□□□ -1.87
SHMT2-216ENST00000554975 KRTAP9-9Q9BYP9 154 aa3.35□□□□□ -1.87
SHMT2-216ENST00000554975 MT1AP04731 61 aa3.29□□□□□ -1.88
SHMT2-216ENST00000554975 OBSCNQ5VST9 7968 aa3.27□□□□□ -1.89
SHMT2-216ENST00000554975 KRTAP6-1Q3LI64 71 aa3.21□□□□□ -1.9
SHMT2-216ENST00000554975 KRTAP6-2Q3LI66 62 aa3.12□□□□□ -1.91
SHMT2-216ENST00000554975 KRTAP5-1Q6L8H4 278 aa3.11□□□□□ -1.91
SHMT2-216ENST00000554975 LCE3DQ9BYE3 92 aa3.04□□□□□ -1.92
SHMT2-216ENST00000554975 LCE3EQ5T5B0 92 aa3.02□□□□□ -1.93
SHMT2-216ENST00000554975 MT3P25713 68 aa2.97□□□□□ -1.93
SHMT2-216ENST00000554975 KRTAP4-2Q9BYR5 136 aa2.9□□□□□ -1.95
SHMT2-216ENST00000554975 PRM1P04553 51 aa2.73□□□□□ -1.97
SHMT2-216ENST00000554975 LCE1EQ5T753 118 aa2.73□□□□□ -1.97
SHMT2-216ENST00000554975 LCE1BQ5T7P3 118 aa2.66□□□□□ -1.98
SHMT2-216ENST00000554975 LCE1CQ5T751 118 aa2.54□□□□□ -2
SHMT2-216ENST00000554975 LCE1FQ5T754 118 aa2.52□□□□□ -2.01
SHMT2-216ENST00000554975 KRTAP5-11Q6L8G4 156 aa2.48□□□□□ -2.01
SHMT2-216ENST00000554975 PHGR1C9JFL3 82 aa2.44□□□□□ -2.02
SHMT2-216ENST00000554975 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.26□□□□□ -2.05
SHMT2-216ENST00000554975 KRTAP21-2Q3LI59 83 aa2.1□□□□□ -2.07
SHMT2-216ENST00000554975 KRTAP4-4Q9BYR3 166 aa2.04□□□□□ -2.08
SHMT2-216ENST00000554975 MUC19Q7Z5P9 8384 aa2.03□□□□□ -2.08
SHMT2-216ENST00000554975 KRTAP21-1Q3LI58 79 aa1.83□□□□□ -2.12
SHMT2-216ENST00000554975 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 101.8 ms