RNA–Protein interactions for RNA: ENST00000554514.1

ARHGEF40-203, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 2,928 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-203ENST00000554514 KRTAP2-3P0C7H8 128 aa5.24□□□□□ -1.57
ARHGEF40-203ENST00000554514 KRTAP2-4Q9BYR9 128 aa5.24□□□□□ -1.57
ARHGEF40-203ENST00000554514 KRTAP2-1Q9BYU5 128 aa5.24□□□□□ -1.57
ARHGEF40-203ENST00000554514 LOC100996750A0A140TA64 210 aa5.23□□□□□ -1.57
ARHGEF40-203ENST00000554514 LCE2DQ5TA82 110 aaPredicted RBP5.19□□□□□ -1.58
ARHGEF40-203ENST00000554514 KRTAP19-4Q3LI73 84 aa5.18□□□□□ -1.58
ARHGEF40-203ENST00000554514 CRCT1Q9UGL9 99 aa5.18□□□□□ -1.58
ARHGEF40-203ENST00000554514 MT1GP13640 62 aa5.17□□□□□ -1.58
ARHGEF40-203ENST00000554514 DSTQ03001 7570 aaKnown RBP5.13□□□□□ -1.59
ARHGEF40-203ENST00000554514 MT1MQ8N339 61 aa5.09□□□□□ -1.59
ARHGEF40-203ENST00000554514 KRTAP19-3Q7Z4W3 81 aa5.09□□□□□ -1.6
ARHGEF40-203ENST00000554514 KRTAP9-2Q9BYQ4 174 aa5.03□□□□□ -1.6
ARHGEF40-203ENST00000554514 SPRR2FQ96RM1 72 aa5.03□□□□□ -1.6
ARHGEF40-203ENST00000554514 MACF1Q9UPN3 7388 aaKnown RBP4.98□□□□□ -1.61
ARHGEF40-203ENST00000554514 LCE5AQ5TCM9 118 aa4.89□□□□□ -1.63
ARHGEF40-203ENST00000554514 SYNE2Q8WXH0 6885 aaKnown RBP4.87□□□□□ -1.63
ARHGEF40-203ENST00000554514 MDN1Q9NU22 5596 aa4.81□□□□□ -1.64
ARHGEF40-203ENST00000554514 LCE3BQ5TA77 95 aa4.79□□□□□ -1.64
ARHGEF40-203ENST00000554514 SYNE1Q8NF91 8797 aaKnown RBP4.76□□□□□ -1.65
ARHGEF40-203ENST00000554514 KRTAP12-4P60329 112 aa4.74□□□□□ -1.65
ARHGEF40-203ENST00000554514 KRTAP9-6A0A140TA67 174 aa4.73□□□□□ -1.65
ARHGEF40-203ENST00000554514 KRTAP4-9Q9BYQ8 210 aa4.71□□□□□ -1.66
ARHGEF40-203ENST00000554514 KRTAP6-1Q3LI64 71 aa4.65□□□□□ -1.66
ARHGEF40-203ENST00000554514 LCE1AQ5T7P2 110 aa4.6□□□□□ -1.67
ARHGEF40-203ENST00000554514 SPRR2EP22531 72 aa4.56□□□□□ -1.68
ARHGEF40-203ENST00000554514 SPRR2BP35325 72 aa4.56□□□□□ -1.68
ARHGEF40-203ENST00000554514 SPRR2AP35326 72 aa4.56□□□□□ -1.68
ARHGEF40-203ENST00000554514 MT1AP04731 61 aa4.53□□□□□ -1.68
ARHGEF40-203ENST00000554514 KRTAP5-9P26371 169 aa4.5□□□□□ -1.69
ARHGEF40-203ENST00000554514 KRTAP5-5Q701N2 237 aaPredicted RBP4.43□□□□□ -1.7
ARHGEF40-203ENST00000554514 LCE3DQ9BYE3 92 aa4.43□□□□□ -1.7
ARHGEF40-203ENST00000554514 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.42□□□□□ -1.7
ARHGEF40-203ENST00000554514 KRTAP2-2Q9BYT5 123 aa4.42□□□□□ -1.7
ARHGEF40-203ENST00000554514 OBSCNQ5VST9 7968 aa4.39□□□□□ -1.71
ARHGEF40-203ENST00000554514 SPRR2DP22532 72 aa4.35□□□□□ -1.71
ARHGEF40-203ENST00000554514 LCE3EQ5T5B0 92 aa4.35□□□□□ -1.71
ARHGEF40-203ENST00000554514 KRTAP9-7A8MTY7 169 aa4.31□□□□□ -1.72
ARHGEF40-203ENST00000554514 KRTAP6-3Q3LI67 103 aa4.31□□□□□ -1.72
ARHGEF40-203ENST00000554514 KRTAP9-4Q9BYQ2 154 aa4.27□□□□□ -1.73
ARHGEF40-203ENST00000554514 PRM1P04553 51 aa4.2□□□□□ -1.74
ARHGEF40-203ENST00000554514 LCE1EQ5T753 118 aa4.2□□□□□ -1.74
ARHGEF40-203ENST00000554514 KRTAP6-2Q3LI66 62 aa4.19□□□□□ -1.74
ARHGEF40-203ENST00000554514 MT3P25713 68 aa4.09□□□□□ -1.75
ARHGEF40-203ENST00000554514 NEBP20929 6669 aa4□□□□□ -1.77
ARHGEF40-203ENST00000554514 LCE1DQ5T752 114 aa4□□□□□ -1.77
ARHGEF40-203ENST00000554514 LCE1FQ5T754 118 aa3.94□□□□□ -1.78
ARHGEF40-203ENST00000554514 MT4P47944 62 aa3.92□□□□□ -1.78
ARHGEF40-203ENST00000554514 KRTAP4-6Q9BYQ5 205 aa3.9□□□□□ -1.78
ARHGEF40-203ENST00000554514 KRTAP5-4Q6L8H1 288 aa3.88□□□□□ -1.79
ARHGEF40-203ENST00000554514 KRTAP20-1Q3LI63 56 aa3.77□□□□□ -1.81
ARHGEF40-203ENST00000554514 KRTAP20-2Q3LI61 65 aa3.73□□□□□ -1.81
ARHGEF40-203ENST00000554514 HMCN1Q96RW7 5635 aa3.69□□□□□ -1.82
ARHGEF40-203ENST00000554514 LCE4AQ5TA78 99 aa3.65□□□□□ -1.82
ARHGEF40-203ENST00000554514 KRTAP5-2Q701N4 177 aa3.62□□□□□ -1.83
ARHGEF40-203ENST00000554514 MUC5ACP98088 5654 aa3.51□□□□□ -1.85
ARHGEF40-203ENST00000554514 KRTAP5-3Q6L8H2 238 aa3.5□□□□□ -1.85
ARHGEF40-203ENST00000554514 LCE1BQ5T7P3 118 aa3.44□□□□□ -1.86
ARHGEF40-203ENST00000554514 MUC19Q7Z5P9 8384 aa3.36□□□□□ -1.87
ARHGEF40-203ENST00000554514 KRTAP4-11Q9BYQ6 195 aa3.22□□□□□ -1.89
ARHGEF40-203ENST00000554514 KRTAP5-10Q6L8G5 202 aa3.2□□□□□ -1.9
ARHGEF40-203ENST00000554514 KRTAP9-9Q9BYP9 154 aa3.2□□□□□ -1.9
ARHGEF40-203ENST00000554514 KRTAP4-2Q9BYR5 136 aa3.16□□□□□ -1.9
ARHGEF40-203ENST00000554514 KRTAP5-1Q6L8H4 278 aa3.13□□□□□ -1.91
ARHGEF40-203ENST00000554514 LCE1CQ5T751 118 aa3.1□□□□□ -1.91
ARHGEF40-203ENST00000554514 GPR98Q8WXG9 6306 aa3.07□□□□□ -1.92
ARHGEF40-203ENST00000554514 AHNAK2Q8IVF2 5795 aa3.03□□□□□ -1.92
ARHGEF40-203ENST00000554514 KRTAP21-2Q3LI59 83 aa2.96□□□□□ -1.94
ARHGEF40-203ENST00000554514 KRTAP5-8O75690 187 aa2.93□□□□□ -1.94
ARHGEF40-203ENST00000554514 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.88□□□□□ -1.95
ARHGEF40-203ENST00000554514 KRTAP4-4Q9BYR3 166 aa2.87□□□□□ -1.95
ARHGEF40-203ENST00000554514 MUC5BQ9HC84 5762 aaPredicted RBP2.78□□□□□ -1.96
ARHGEF40-203ENST00000554514 KRTAP5-7Q6L8G8 165 aa2.78□□□□□ -1.96
ARHGEF40-203ENST00000554514 KRTAP4-12Q9BQ66 201 aa2.72□□□□□ -1.97
ARHGEF40-203ENST00000554514 KRTAP5-11Q6L8G4 156 aa2.66□□□□□ -1.98
ARHGEF40-203ENST00000554514 KRTAP21-1Q3LI58 79 aa2.54□□□□□ -2
ARHGEF40-203ENST00000554514 AHNAKQ09666 5890 aaKnown RBP2.37□□□□□ -2.03
ARHGEF40-203ENST00000554514 PHGR1C9JFL3 82 aa2.32□□□□□ -2.04
ARHGEF40-203ENST00000554514 MUC16Q8WXI7 14507 aa1.56□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 8.5 ms