RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 PLAC4Q8WY50 150 aa1.18□□□□□ -2.22
PRPF39-207ENST00000554439 MUC2Q02817 5179 aa1.18□□□□□ -2.22
PRPF39-207ENST00000554439 MUC5ACP98088 5654 aa1.18□□□□□ -2.22
PRPF39-207ENST00000554439 LCE1CQ5T751 118 aa1.18□□□□□ -2.22
PRPF39-207ENST00000554439 LCE1BQ5T7P3 118 aa1.18□□□□□ -2.22
PRPF39-207ENST00000554439 LCE3EQ5T5B0 92 aa1.16□□□□□ -2.22
PRPF39-207ENST00000554439 EPPK1P58107 5090 aaKnown RBP1.15□□□□□ -2.22
PRPF39-207ENST00000554439 KRTAP4-1Q9BYQ7 146 aa1.15□□□□□ -2.22
PRPF39-207ENST00000554439 PCLOQ9Y6V0 5065 aa1.13□□□□□ -2.23
PRPF39-207ENST00000554439 FLGP20930 4061 aaPredicted RBP1.13□□□□□ -2.23
PRPF39-207ENST00000554439 KRTAP19-2Q3LHN2 52 aa1.12□□□□□ -2.23
PRPF39-207ENST00000554439 PP632Q6XCG6 107 aa1.11□□□□□ -2.23
PRPF39-207ENST00000554439 FAT4Q6V0I7 4981 aa1.1□□□□□ -2.23
PRPF39-207ENST00000554439 TNP1P09430 55 aa1.08□□□□□ -2.24
PRPF39-207ENST00000554439 HERC2O95714 4834 aa1.08□□□□□ -2.24
PRPF39-207ENST00000554439 SPRR5A0A1B0GTR4 108 aa1.08□□□□□ -2.24
PRPF39-207ENST00000554439 BIRC6Q9NR09 4857 aa1.07□□□□□ -2.24
PRPF39-207ENST00000554439 HERC1Q15751 4861 aa1.06□□□□□ -2.24
PRPF39-207ENST00000554439 HMCN2Q8NDA2 5059 aa1.05□□□□□ -2.24
PRPF39-207ENST00000554439 UBR4Q5T4S7 5183 aa1.04□□□□□ -2.24
PRPF39-207ENST00000554439 RNF213Q63HN8 5207 aa1.04□□□□□ -2.24
PRPF39-207ENST00000554439 KRTAP5-7Q6L8G8 165 aa1.04□□□□□ -2.24
PRPF39-207ENST00000554439 SPRR2GQ9BYE4 73 aa1.02□□□□□ -2.25
PRPF39-207ENST00000554439 M0R2T5 61 aa1.01□□□□□ -2.25
PRPF39-207ENST00000554439 MT1FP04733 61 aa1.01□□□□□ -2.25
PRPF39-207ENST00000554439 LCE3DQ9BYE3 92 aa1.01□□□□□ -2.25
PRPF39-207ENST00000554439 KMT2DO14686 5537 aa1□□□□□ -2.25
PRPF39-207ENST00000554439 KRTAP10-10P60014 251 aa1□□□□□ -2.25
PRPF39-207ENST00000554439 PRO2289Q9P1D8 64 aa1□□□□□ -2.25
PRPF39-207ENST00000554439 MACF1Q9UPN3 7388 aaKnown RBP0.99□□□□□ -2.25
PRPF39-207ENST00000554439 MT2AP02795 61 aa0.99□□□□□ -2.25
PRPF39-207ENST00000554439 MT1HP80294 61 aa0.99□□□□□ -2.25
PRPF39-207ENST00000554439 KRTAP8-1Q8IUC2 63 aa0.99□□□□□ -2.25
PRPF39-207ENST00000554439 MT1XP80297 61 aa0.99□□□□□ -2.25
PRPF39-207ENST00000554439 KRTAP12-3P60328 96 aa0.98□□□□□ -2.25
PRPF39-207ENST00000554439 MT1BP07438 61 aa0.97□□□□□ -2.25
PRPF39-207ENST00000554439 USH2AO75445 5202 aa0.97□□□□□ -2.25
PRPF39-207ENST00000554439 INE1O15225 51 aa0.97□□□□□ -2.25
PRPF39-207ENST00000554439 KRTAP19-8Q3LI54 63 aa0.96□□□□□ -2.26
PRPF39-207ENST00000554439 KRTAP6-3Q3LI67 103 aa0.94□□□□□ -2.26
PRPF39-207ENST00000554439 KRTAP19-5Q3LI72 72 aa0.94□□□□□ -2.26
PRPF39-207ENST00000554439 KRTAP2-3P0C7H8 128 aa0.88□□□□□ -2.27
PRPF39-207ENST00000554439 KRTAP2-4Q9BYR9 128 aa0.88□□□□□ -2.27
PRPF39-207ENST00000554439 KRTAP2-1Q9BYU5 128 aa0.88□□□□□ -2.27
PRPF39-207ENST00000554439 KRTAP19-7Q3SYF9 63 aa0.87□□□□□ -2.27
PRPF39-207ENST00000554439 KRTAP20-1Q3LI63 56 aa0.86□□□□□ -2.27
PRPF39-207ENST00000554439 DSTQ03001 7570 aaKnown RBP0.86□□□□□ -2.27
PRPF39-207ENST00000554439 FSIP2Q5CZC0 6907 aa0.86□□□□□ -2.27
PRPF39-207ENST00000554439 MT1LQ93083 61 aa0.85□□□□□ -2.27
PRPF39-207ENST00000554439 SSPOA2VEC9 5147 aa0.84□□□□□ -2.27
PRPF39-207ENST00000554439 MT1EP04732 61 aa0.84□□□□□ -2.27
PRPF39-207ENST00000554439 MUC12Q9UKN1 5478 aa0.84□□□□□ -2.28
PRPF39-207ENST00000554439 FCGBPQ9Y6R7 5405 aaPredicted RBP0.84□□□□□ -2.28
PRPF39-207ENST00000554439 SYNE2Q8WXH0 6885 aaKnown RBP0.83□□□□□ -2.28
PRPF39-207ENST00000554439 MT1GP13640 62 aa0.82□□□□□ -2.28
PRPF39-207ENST00000554439 KRTAP21-2Q3LI59 83 aa0.82□□□□□ -2.28
PRPF39-207ENST00000554439 MDN1Q9NU22 5596 aa0.81□□□□□ -2.28
PRPF39-207ENST00000554439 KRTAP12-4P60329 112 aa0.81□□□□□ -2.28
PRPF39-207ENST00000554439 KRTAP5-10Q6L8G5 202 aa0.8□□□□□ -2.28
PRPF39-207ENST00000554439 MUC19Q7Z5P9 8384 aa0.78□□□□□ -2.28
PRPF39-207ENST00000554439 MT1MQ8N339 61 aa0.78□□□□□ -2.28
PRPF39-207ENST00000554439 SYNE1Q8NF91 8797 aaKnown RBP0.78□□□□□ -2.28
PRPF39-207ENST00000554439 KRTAP19-3Q7Z4W3 81 aa0.77□□□□□ -2.29
PRPF39-207ENST00000554439 KRTAP19-6Q3LI70 58 aa0.75□□□□□ -2.29
PRPF39-207ENST00000554439 KRTAP6-1Q3LI64 71 aa0.74□□□□□ -2.29
PRPF39-207ENST00000554439 PRM1P04553 51 aa0.73□□□□□ -2.29
PRPF39-207ENST00000554439 SPRR2FQ96RM1 72 aa0.73□□□□□ -2.29
PRPF39-207ENST00000554439 MT1AP04731 61 aa0.72□□□□□ -2.29
PRPF39-207ENST00000554439 KRTAP6-2Q3LI66 62 aa0.69□□□□□ -2.3
PRPF39-207ENST00000554439 SPRR2EP22531 72 aa0.66□□□□□ -2.3
PRPF39-207ENST00000554439 SPRR2BP35325 72 aa0.66□□□□□ -2.3
PRPF39-207ENST00000554439 SPRR2AP35326 72 aa0.66□□□□□ -2.3
PRPF39-207ENST00000554439 SPRR2DP22532 72 aa0.64□□□□□ -2.31
PRPF39-207ENST00000554439 MUC16Q8WXI7 14507 aa0.57□□□□□ -2.32
PRPF39-207ENST00000554439 MT4P47944 62 aa0.57□□□□□ -2.32
PRPF39-207ENST00000554439 KRTAP20-2Q3LI61 65 aa0.53□□□□□ -2.32
PRPF39-207ENST00000554439 KRTAP21-1Q3LI58 79 aa0.51□□□□□ -2.33
PRPF39-207ENST00000554439 PHGR1C9JFL3 82 aa0.37□□□□□ -2.35
Retrieved 78 of 20,778 RNA–protein pairs in 113.7 ms