RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 KRTAP4-1Q9BYQ7 146 aa1.38□□□□□ -2.19
PRPF39-206ENST00000554429 PLAC4Q8WY50 150 aa1.38□□□□□ -2.19
PRPF39-206ENST00000554429 MACF1Q9UPN3 7388 aaKnown RBP1.38□□□□□ -2.19
PRPF39-206ENST00000554429 INE1O15225 51 aa1.37□□□□□ -2.19
PRPF39-206ENST00000554429 MT1HP80294 61 aa1.37□□□□□ -2.19
PRPF39-206ENST00000554429 C10orf95Q9H7T3 257 aa1.37□□□□□ -2.19
PRPF39-206ENST00000554429 MRPL34Q9BQ48 92 aaKnown RBP1.35□□□□□ -2.19
PRPF39-206ENST00000554429 MUC5ACP98088 5654 aa1.35□□□□□ -2.19
PRPF39-206ENST00000554429 MT3P25713 68 aa1.35□□□□□ -2.19
PRPF39-206ENST00000554429 C9orf92A6NGG3 77 aa1.35□□□□□ -2.19
PRPF39-206ENST00000554429 FLGP20930 4061 aaPredicted RBP1.34□□□□□ -2.19
PRPF39-206ENST00000554429 SPRR1BP22528 89 aa1.34□□□□□ -2.19
PRPF39-206ENST00000554429 H0YAA0 97 aa1.34□□□□□ -2.2
PRPF39-206ENST00000554429 A0A0D9SG42 100 aa1.32□□□□□ -2.2
PRPF39-206ENST00000554429 OBSCNQ5VST9 7968 aa1.32□□□□□ -2.2
PRPF39-206ENST00000554429 RPL37P61927 97 aaKnown RBP1.31□□□□□ -2.2
PRPF39-206ENST00000554429 TP53AIP1Q9HCN2 124 aa1.31□□□□□ -2.2
PRPF39-206ENST00000554429 KRTAP10-12P60413 245 aa1.31□□□□□ -2.2
PRPF39-206ENST00000554429 MDN1Q9NU22 5596 aa1.3□□□□□ -2.2
PRPF39-206ENST00000554429 PP632Q6XCG6 107 aa1.29□□□□□ -2.2
PRPF39-206ENST00000554429 KRTAP12-2P59991 146 aa1.28□□□□□ -2.2
PRPF39-206ENST00000554429 FSIP2Q5CZC0 6907 aa1.27□□□□□ -2.21
PRPF39-206ENST00000554429 KRTAP19-6Q3LI70 58 aa1.27□□□□□ -2.21
PRPF39-206ENST00000554429 USH2AO75445 5202 aa1.27□□□□□ -2.21
PRPF39-206ENST00000554429 KMT2DO14686 5537 aa1.27□□□□□ -2.21
PRPF39-206ENST00000554429 MT2AP02795 61 aa1.26□□□□□ -2.21
PRPF39-206ENST00000554429 M0R2T5 61 aa1.25□□□□□ -2.21
PRPF39-206ENST00000554429 H1FX-AS1Q4G0G2 97 aa1.25□□□□□ -2.21
PRPF39-206ENST00000554429 FCGBPQ9Y6R7 5405 aaPredicted RBP1.25□□□□□ -2.21
PRPF39-206ENST00000554429 COX6B2Q6YFQ2 88 aa1.24□□□□□ -2.21
PRPF39-206ENST00000554429 MT1FP04733 61 aa1.24□□□□□ -2.21
PRPF39-206ENST00000554429 KRTAP13-4Q3LI77 160 aa1.24□□□□□ -2.21
PRPF39-206ENST00000554429 KRTAP5-5Q701N2 237 aaPredicted RBP1.22□□□□□ -2.21
PRPF39-206ENST00000554429 LCE1FQ5T754 118 aa1.2□□□□□ -2.22
PRPF39-206ENST00000554429 LCE3AQ5TA76 89 aa1.19□□□□□ -2.22
PRPF39-206ENST00000554429 KRTAP10-10P60014 251 aa1.19□□□□□ -2.22
PRPF39-206ENST00000554429 LCE1CQ5T751 118 aa1.18□□□□□ -2.22
PRPF39-206ENST00000554429 LCE1BQ5T7P3 118 aa1.18□□□□□ -2.22
PRPF39-206ENST00000554429 KRTAP12-1P59990 96 aa1.17□□□□□ -2.22
PRPF39-206ENST00000554429 S4R3F8 94 aa1.17□□□□□ -2.22
PRPF39-206ENST00000554429 KRTAP19-8Q3LI54 63 aa1.16□□□□□ -2.22
PRPF39-206ENST00000554429 M0QZ58 72 aa1.14□□□□□ -2.23
PRPF39-206ENST00000554429 MT1BP07438 61 aa1.14□□□□□ -2.23
PRPF39-206ENST00000554429 LCE3CQ5T5A8 94 aa1.14□□□□□ -2.23
PRPF39-206ENST00000554429 SPRR2GQ9BYE4 73 aa1.14□□□□□ -2.23
PRPF39-206ENST00000554429 MUC12Q9UKN1 5478 aa1.08□□□□□ -2.24
PRPF39-206ENST00000554429 LCE3EQ5T5B0 92 aa1.06□□□□□ -2.24
PRPF39-206ENST00000554429 SPRR2EP22531 72 aa1.05□□□□□ -2.24
PRPF39-206ENST00000554429 SPRR2BP35325 72 aa1.05□□□□□ -2.24
PRPF39-206ENST00000554429 SPRR2AP35326 72 aa1.05□□□□□ -2.24
PRPF39-206ENST00000554429 DSTQ03001 7570 aaKnown RBP1.05□□□□□ -2.24
PRPF39-206ENST00000554429 MT1XP80297 61 aa1.04□□□□□ -2.24
PRPF39-206ENST00000554429 SPRR2FQ96RM1 72 aa1.03□□□□□ -2.24
PRPF39-206ENST00000554429 SPRR2DP22532 72 aa1.03□□□□□ -2.24
PRPF39-206ENST00000554429 KRTAP8-1Q8IUC2 63 aa1.02□□□□□ -2.25
PRPF39-206ENST00000554429 KRTAP12-4P60329 112 aa1.01□□□□□ -2.25
PRPF39-206ENST00000554429 SYNE1Q8NF91 8797 aaKnown RBP1□□□□□ -2.25
PRPF39-206ENST00000554429 LCE3DQ9BYE3 92 aa0.99□□□□□ -2.25
PRPF39-206ENST00000554429 TNP1P09430 55 aa0.99□□□□□ -2.25
PRPF39-206ENST00000554429 KRTAP19-3Q7Z4W3 81 aa0.94□□□□□ -2.26
PRPF39-206ENST00000554429 KRTAP19-7Q3SYF9 63 aa0.93□□□□□ -2.26
PRPF39-206ENST00000554429 MT1EP04732 61 aa0.93□□□□□ -2.26
PRPF39-206ENST00000554429 MT1GP13640 62 aa0.92□□□□□ -2.26
PRPF39-206ENST00000554429 KRTAP12-3P60328 96 aa0.9□□□□□ -2.27
PRPF39-206ENST00000554429 MT1MQ8N339 61 aa0.89□□□□□ -2.27
PRPF39-206ENST00000554429 KRTAP19-5Q3LI72 72 aa0.87□□□□□ -2.27
PRPF39-206ENST00000554429 MT1LQ93083 61 aa0.87□□□□□ -2.27
PRPF39-206ENST00000554429 MT4P47944 62 aa0.86□□□□□ -2.27
PRPF39-206ENST00000554429 KRTAP20-2Q3LI61 65 aa0.86□□□□□ -2.27
PRPF39-206ENST00000554429 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
PRPF39-206ENST00000554429 MUC19Q7Z5P9 8384 aa0.82□□□□□ -2.28
PRPF39-206ENST00000554429 KRTAP21-2Q3LI59 83 aa0.82□□□□□ -2.28
PRPF39-206ENST00000554429 PHGR1C9JFL3 82 aa0.81□□□□□ -2.28
PRPF39-206ENST00000554429 PRM1P04553 51 aa0.79□□□□□ -2.28
PRPF39-206ENST00000554429 MT1AP04731 61 aa0.76□□□□□ -2.29
PRPF39-206ENST00000554429 KRTAP6-1Q3LI64 71 aa0.72□□□□□ -2.29
PRPF39-206ENST00000554429 KRTAP6-2Q3LI66 62 aa0.69□□□□□ -2.3
PRPF39-206ENST00000554429 MUC16Q8WXI7 14507 aa0.58□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 87.4 ms