RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 NEBP20929 6669 aa9.48□□□□□ -0.89
CCDC88C-205ENST00000553403 MT1EP04732 61 aa9.45□□□□□ -0.9
CCDC88C-205ENST00000553403 LCE3CQ5T5A8 94 aa9.42□□□□□ -0.9
CCDC88C-205ENST00000553403 KRTAP19-4Q3LI73 84 aa9.42□□□□□ -0.9
CCDC88C-205ENST00000553403 KRTAP20-1Q3LI63 56 aa9.33□□□□□ -0.92
CCDC88C-205ENST00000553403 MT1LQ93083 61 aa9.33□□□□□ -0.92
CCDC88C-205ENST00000553403 SPRR2FQ96RM1 72 aa9.31□□□□□ -0.92
CCDC88C-205ENST00000553403 MDN1Q9NU22 5596 aa9.27□□□□□ -0.93
CCDC88C-205ENST00000553403 SPRR2EP22531 72 aa9.19□□□□□ -0.94
CCDC88C-205ENST00000553403 SPRR2BP35325 72 aa9.19□□□□□ -0.94
CCDC88C-205ENST00000553403 SPRR2AP35326 72 aa9.19□□□□□ -0.94
CCDC88C-205ENST00000553403 H3BS24 57 aa9.16□□□□□ -0.94
CCDC88C-205ENST00000553403 KRTAP2-3P0C7H8 128 aa9.08□□□□□ -0.96
CCDC88C-205ENST00000553403 KRTAP2-4Q9BYR9 128 aa9.08□□□□□ -0.96
CCDC88C-205ENST00000553403 KRTAP4-7Q9BYR0 210 aa9.06□□□□□ -0.96
CCDC88C-205ENST00000553403 KRTAP19-3Q7Z4W3 81 aa9.01□□□□□ -0.97
CCDC88C-205ENST00000553403 LCE1AQ5T7P2 110 aa8.99□□□□□ -0.97
CCDC88C-205ENST00000553403 MT1GP13640 62 aa8.97□□□□□ -0.97
CCDC88C-205ENST00000553403 KRTAP9-6A8MVA2 160 aa8.92□□□□□ -0.98
CCDC88C-205ENST00000553403 SPRR2DP22532 72 aa8.89□□□□□ -0.99
CCDC88C-205ENST00000553403 MT1MQ8N339 61 aa8.88□□□□□ -0.99
CCDC88C-205ENST00000553403 LCE5AQ5TCM9 118 aa8.8□□□□□ -1
CCDC88C-205ENST00000553403 KRTAP2-2Q9BYT5 123 aa8.79□□□□□ -1
CCDC88C-205ENST00000553403 KRTAP2-1Q9BYU5 128 aa8.79□□□□□ -1
CCDC88C-205ENST00000553403 KRTAP4-3Q9BYR4 195 aa8.71□□□□□ -1.02
CCDC88C-205ENST00000553403 A0A0A0MQY5 61 aa8.65□□□□□ -1.02
CCDC88C-205ENST00000553403 LCE3BQ5TA77 95 aa8.63□□□□□ -1.03
CCDC88C-205ENST00000553403 LOC100996750A0A140TA64 210 aa8.49□□□□□ -1.05
CCDC88C-205ENST00000553403 DSTQ03001 7570 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-205ENST00000553403 INE1O15225 51 aa8.07□□□□□ -1.12
CCDC88C-205ENST00000553403 KRTAP4-9Q9BYQ8 210 aa8.02□□□□□ -1.13
CCDC88C-205ENST00000553403 KRTAP5-5Q701N2 237 aaPredicted RBP7.97□□□□□ -1.13
CCDC88C-205ENST00000553403 MT1AP04731 61 aa7.93□□□□□ -1.14
CCDC88C-205ENST00000553403 KRTAP6-1Q3LI64 71 aa7.84□□□□□ -1.15
CCDC88C-205ENST00000553403 LCE4AQ5TA78 99 aa7.83□□□□□ -1.16
CCDC88C-205ENST00000553403 LCE1DQ5T752 114 aa7.81□□□□□ -1.16
CCDC88C-205ENST00000553403 MT4P47944 62 aa7.76□□□□□ -1.17
CCDC88C-205ENST00000553403 GPR98Q8WXG9 6306 aa7.68□□□□□ -1.18
CCDC88C-205ENST00000553403 HMCN1Q96RW7 5635 aa7.63□□□□□ -1.19
CCDC88C-205ENST00000553403 KRTAP5-4Q6L8H1 288 aa7.6□□□□□ -1.19
CCDC88C-205ENST00000553403 KRTAP9-4Q9BYQ2 154 aa7.51□□□□□ -1.21
CCDC88C-205ENST00000553403 KRTAP4-6Q9BYQ5 205 aa7.48□□□□□ -1.21
CCDC88C-205ENST00000553403 SYNE1Q8NF91 8797 aaKnown RBP7.41□□□□□ -1.22
CCDC88C-205ENST00000553403 AHNAK2Q8IVF2 5795 aa7.36□□□□□ -1.23
CCDC88C-205ENST00000553403 KRTAP12-4P60329 112 aa7.3□□□□□ -1.24
CCDC88C-205ENST00000553403 KRTAP5-10Q6L8G5 202 aa7.22□□□□□ -1.25
CCDC88C-205ENST00000553403 KRTAP20-2Q3LI61 65 aa7.22□□□□□ -1.25
CCDC88C-205ENST00000553403 MT3P25713 68 aa7.16□□□□□ -1.26
CCDC88C-205ENST00000553403 KRTAP6-2Q3LI66 62 aa7.16□□□□□ -1.26
CCDC88C-205ENST00000553403 LCE3DQ9BYE3 92 aa7.13□□□□□ -1.27
CCDC88C-205ENST00000553403 KRTAP5-3Q6L8H2 238 aa7.09□□□□□ -1.27
CCDC88C-205ENST00000553403 LCE3EQ5T5B0 92 aa7□□□□□ -1.29
CCDC88C-205ENST00000553403 KRTAP5-7Q6L8G8 165 aa6.96□□□□□ -1.3
CCDC88C-205ENST00000553403 KRTAP5-2Q701N4 177 aa6.82□□□□□ -1.32
CCDC88C-205ENST00000553403 KRTAP4-11Q9BYQ6 195 aa6.6□□□□□ -1.35
CCDC88C-205ENST00000553403 OBSCNQ5VST9 7968 aa6.4□□□□□ -1.38
CCDC88C-205ENST00000553403 KRTAP5-8O75690 187 aa6.35□□□□□ -1.39
CCDC88C-205ENST00000553403 PRM1P04553 51 aa6.26□□□□□ -1.41
CCDC88C-205ENST00000553403 LCE1EQ5T753 118 aa6.14□□□□□ -1.43
CCDC88C-205ENST00000553403 KRTAP9-9Q9BYP9 154 aa6.11□□□□□ -1.43
CCDC88C-205ENST00000553403 MUC5BQ9HC84 5762 aaPredicted RBP6.04□□□□□ -1.44
CCDC88C-205ENST00000553403 AHNAKQ09666 5890 aaKnown RBP6.03□□□□□ -1.44
CCDC88C-205ENST00000553403 MUC5ACP98088 5654 aa6.02□□□□□ -1.45
CCDC88C-205ENST00000553403 KRTAP5-1Q6L8H4 278 aa5.97□□□□□ -1.45
CCDC88C-205ENST00000553403 LCE1BQ5T7P3 118 aa5.75□□□□□ -1.49
CCDC88C-205ENST00000553403 LCE1CQ5T751 118 aa5.71□□□□□ -1.5
CCDC88C-205ENST00000553403 KRTAP4-2Q9BYR5 136 aa5.7□□□□□ -1.5
CCDC88C-205ENST00000553403 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.39□□□□□ -1.55
CCDC88C-205ENST00000553403 KRTAP21-2Q3LI59 83 aa5.13□□□□□ -1.59
CCDC88C-205ENST00000553403 KRTAP5-11Q6L8G4 156 aa5.01□□□□□ -1.61
CCDC88C-205ENST00000553403 KRTAP4-12Q9BQ66 201 aa4.97□□□□□ -1.61
CCDC88C-205ENST00000553403 LCE1FQ5T754 118 aa4.73□□□□□ -1.65
CCDC88C-205ENST00000553403 KRTAP4-4Q9BYR3 166 aa4.51□□□□□ -1.69
CCDC88C-205ENST00000553403 PHGR1C9JFL3 82 aa4.29□□□□□ -1.72
CCDC88C-205ENST00000553403 KRTAP21-1Q3LI58 79 aa3.91□□□□□ -1.78
CCDC88C-205ENST00000553403 MUC19Q7Z5P9 8384 aa3.87□□□□□ -1.79
CCDC88C-205ENST00000553403 MUC16Q8WXI7 14507 aa2.87□□□□□ -1.95
Retrieved 77 of 20,778 RNA–protein pairs in 12.7 ms