RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	GPR98	Q8WXG9	6306 aa		1.15	□□□□□ -2.22
SNHG1-222	ENST00000545308	PMCHL2	Q9BQD1	86 aa		1.15	□□□□□ -2.23
SNHG1-222	ENST00000545308	SYS1-DBNDD2	H3BUS1	97 aa		1.14	□□□□□ -2.23
SNHG1-222	ENST00000545308	RBM3	P98179	157 aa	Known RBP	1.14	□□□□□ -2.23
SNHG1-222	ENST00000545308	PYY3	Q5JQD4	70 aa		1.14	□□□□□ -2.23
SNHG1-222	ENST00000545308	C20orf197	Q8N268	126 aa		1.14	□□□□□ -2.23
SNHG1-222	ENST00000545308	MRPL34	Q9BQ48	92 aa	Known RBP	1.14	□□□□□ -2.23
SNHG1-222	ENST00000545308	COX6C	P09669	75 aa		1.13	□□□□□ -2.23
SNHG1-222	ENST00000545308	KRTAP5-10	Q6L8G5	202 aa		1.13	□□□□□ -2.23
SNHG1-222	ENST00000545308	SVBP	Q8N300	66 aa		1.13	□□□□□ -2.23
SNHG1-222	ENST00000545308	SERP1	Q9Y6X1	66 aa		1.13	□□□□□ -2.23
SNHG1-222	ENST00000545308		M0R143	59 aa		1.12	□□□□□ -2.23
SNHG1-222	ENST00000545308		H0YAA0	97 aa		1.11	□□□□□ -2.23
SNHG1-222	ENST00000545308	NDUFC1	O43677	76 aa		1.1	□□□□□ -2.23
SNHG1-222	ENST00000545308	APOC3	P02656	99 aa		1.1	□□□□□ -2.23
SNHG1-222	ENST00000545308	MT4	P47944	62 aa		1.1	□□□□□ -2.23
SNHG1-222	ENST00000545308	MT1X	P80297	61 aa		1.1	□□□□□ -2.23
SNHG1-222	ENST00000545308	NREP	Q16612	68 aa		1.1	□□□□□ -2.23
SNHG1-222	ENST00000545308	HCG22	E2RYF7	251 aa		1.09	□□□□□ -2.23
SNHG1-222	ENST00000545308	KRTDAP	P60985	99 aa		1.09	□□□□□ -2.23
SNHG1-222	ENST00000545308	ACYP2	P14621	99 aa		1.08	□□□□□ -2.24
SNHG1-222	ENST00000545308	HSD52	Q0P140	79 aa		1.08	□□□□□ -2.24
SNHG1-222	ENST00000545308	COL5A1-AS1	Q5SY13	56 aa		1.08	□□□□□ -2.24
SNHG1-222	ENST00000545308	PRO1854	Q9UHT4	67 aa		1.08	□□□□□ -2.24
SNHG1-222	ENST00000545308	MT1G	P13640	62 aa		1.07	□□□□□ -2.24
SNHG1-222	ENST00000545308	AHNAK2	Q8IVF2	5795 aa		1.07	□□□□□ -2.24
SNHG1-222	ENST00000545308	MMP24-AS1	A0A0U1RRL7	71 aa		1.06	□□□□□ -2.24
SNHG1-222	ENST00000545308	KRTAP19-3	Q7Z4W3	81 aa		1.06	□□□□□ -2.24
SNHG1-222	ENST00000545308	PRR15L	Q9BU68	103 aa		1.06	□□□□□ -2.24
SNHG1-222	ENST00000545308	TP53AIP1	Q9HCN2	124 aa		1.06	□□□□□ -2.24
SNHG1-222	ENST00000545308	MT-ATP8	P03928	68 aa		1.05	□□□□□ -2.24
SNHG1-222	ENST00000545308	ACYP1	P07311	99 aa		1.05	□□□□□ -2.24
SNHG1-222	ENST00000545308	GTF2H5	Q6ZYL4	71 aa		1.05	□□□□□ -2.24
SNHG1-222	ENST00000545308		M0QZ58	72 aa		1.04	□□□□□ -2.24
SNHG1-222	ENST00000545308	HIGD1B	Q9P298	99 aa		1.04	□□□□□ -2.24
SNHG1-222	ENST00000545308	COX8A	P10176	69 aa		1.03	□□□□□ -2.24
SNHG1-222	ENST00000545308	VAMP8	Q9BV40	100 aa		1.03	□□□□□ -2.24
SNHG1-222	ENST00000545308		K7EP34	96 aa		1.02	□□□□□ -2.25
SNHG1-222	ENST00000545308	TRAV22	A0A0B4J277	110 aa		1.01	□□□□□ -2.25
SNHG1-222	ENST00000545308	ATXN8	Q156A1	80 aa		1.01	□□□□□ -2.25
SNHG1-222	ENST00000545308	CYP4F30P	Q9H0H9	118 aa		1.01	□□□□□ -2.25
SNHG1-222	ENST00000545308	MT1E	P04732	61 aa		1	□□□□□ -2.25
SNHG1-222	ENST00000545308	ATP5E	P56381	51 aa	Predicted RBP	1	□□□□□ -2.25
SNHG1-222	ENST00000545308		A0A087WVE0	104 aa		0.99	□□□□□ -2.25
SNHG1-222	ENST00000545308	KRTAP20-2	Q3LI61	65 aa		0.99	□□□□□ -2.25
SNHG1-222	ENST00000545308	SPATA8	Q6RVD6	105 aa		0.99	□□□□□ -2.25
SNHG1-222	ENST00000545308	UQCR10	Q9UDW1	63 aa		0.99	□□□□□ -2.25
SNHG1-222	ENST00000545308	ATOX1	O00244	68 aa		0.98	□□□□□ -2.25
SNHG1-222	ENST00000545308	KRTAP19-7	Q3SYF9	63 aa		0.98	□□□□□ -2.25
SNHG1-222	ENST00000545308	UBL5	Q9BZL1	73 aa		0.98	□□□□□ -2.25
SNHG1-222	ENST00000545308		A0A0D9SG42	100 aa		0.97	□□□□□ -2.25
SNHG1-222	ENST00000545308	ETDB	Q3ZM63	59 aa		0.97	□□□□□ -2.25
SNHG1-222	ENST00000545308	MT1M	Q8N339	61 aa		0.97	□□□□□ -2.25
SNHG1-222	ENST00000545308	SPCS1	Q9Y6A9	102 aa		0.97	□□□□□ -2.25
SNHG1-222	ENST00000545308	C10orf95	Q9H7T3	257 aa		0.94	□□□□□ -2.26
SNHG1-222	ENST00000545308		H7BZZ5	65 aa		0.93	□□□□□ -2.26
SNHG1-222	ENST00000545308	KRTAP19-5	Q3LI72	72 aa		0.93	□□□□□ -2.26
SNHG1-222	ENST00000545308	MT1L	Q93083	61 aa		0.93	□□□□□ -2.26
SNHG1-222	ENST00000545308	SERP2	Q8N6R1	65 aa		0.92	□□□□□ -2.26
SNHG1-222	ENST00000545308	MUC5B	Q9HC84	5762 aa	Predicted RBP	0.92	□□□□□ -2.26
SNHG1-222	ENST00000545308	AHNAK	Q09666	5890 aa	Known RBP	0.91	□□□□□ -2.26
SNHG1-222	ENST00000545308		H0Y9P7	68 aa		0.91	□□□□□ -2.26
SNHG1-222	ENST00000545308	CHKB-CPT1B	H3BT56	60 aa		0.91	□□□□□ -2.26
SNHG1-222	ENST00000545308	SYNE1	Q8NF91	8797 aa	Known RBP	0.91	□□□□□ -2.26
SNHG1-222	ENST00000545308	MUC5AC	P98088	5654 aa		0.9	□□□□□ -2.27
SNHG1-222	ENST00000545308	UQCR11	O14957	56 aa		0.88	□□□□□ -2.27
SNHG1-222	ENST00000545308	TNP1	P09430	55 aa		0.88	□□□□□ -2.27
SNHG1-222	ENST00000545308	LINC00643	Q86TS7	51 aa		0.88	□□□□□ -2.27
SNHG1-222	ENST00000545308	ATP5EP2	Q5VTU8	51 aa		0.83	□□□□□ -2.28
SNHG1-222	ENST00000545308	MT1A	P04731	61 aa		0.81	□□□□□ -2.28
SNHG1-222	ENST00000545308	LINC01558	Q9Y6Z2	57 aa		0.81	□□□□□ -2.28
SNHG1-222	ENST00000545308	KRTAP6-2	Q3LI66	62 aa		0.79	□□□□□ -2.28
SNHG1-222	ENST00000545308	KRTAP6-1	Q3LI64	71 aa		0.78	□□□□□ -2.28
SNHG1-222	ENST00000545308	MUC16	Q8WXI7	14507 aa		0.77	□□□□□ -2.29
SNHG1-222	ENST00000545308		A0A1B0GU69	56 aa		0.7	□□□□□ -2.3
SNHG1-222	ENST00000545308	PHGR1	C9JFL3	82 aa		0.69	□□□□□ -2.3
SNHG1-222	ENST00000545308	KRTAP21-1	Q3LI58	79 aa		0.56	□□□□□ -2.32
SNHG1-222	ENST00000545308	PRM1	P04553	51 aa		0.38	□□□□□ -2.35

Retrieved 78 of 20,778 RNA–protein pairs in 86.3 ms