RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	LCE3C	Q5T5A8	94 aa		5.37	□□□□□ -1.55
CHFR-223	ENST00000544268	KRTAP4-7	Q9BYR0	210 aa		5.36	□□□□□ -1.55
CHFR-223	ENST00000544268	KRTAP9-6	A8MVA2	160 aa		5.32	□□□□□ -1.56
CHFR-223	ENST00000544268	MT1E	P04732	61 aa		5.26	□□□□□ -1.57
CHFR-223	ENST00000544268	MUC12	Q9UKN1	5478 aa		5.24	□□□□□ -1.57
CHFR-223	ENST00000544268	KRTAP2-3	P0C7H8	128 aa		5.24	□□□□□ -1.57
CHFR-223	ENST00000544268	KRTAP2-4	Q9BYR9	128 aa		5.24	□□□□□ -1.57
CHFR-223	ENST00000544268	KRTAP2-1	Q9BYU5	128 aa		5.24	□□□□□ -1.57
CHFR-223	ENST00000544268	KRTAP9-7	A8MTY7	169 aa		5.22	□□□□□ -1.57
CHFR-223	ENST00000544268	MT1L	Q93083	61 aa		5.16	□□□□□ -1.58
CHFR-223	ENST00000544268	SPRR2F	Q96RM1	72 aa		5.15	□□□□□ -1.58
CHFR-223	ENST00000544268	MDN1	Q9NU22	5596 aa		5.12	□□□□□ -1.59
CHFR-223	ENST00000544268	KRTAP5-9	P26371	169 aa		5.09	□□□□□ -1.59
CHFR-223	ENST00000544268	KRTAP6-3	Q3LI67	103 aa		5.08	□□□□□ -1.6
CHFR-223	ENST00000544268	KRTAP4-3	Q9BYR4	195 aa		5.05	□□□□□ -1.6
CHFR-223	ENST00000544268	KRTAP19-3	Q7Z4W3	81 aa		5.04	□□□□□ -1.6
CHFR-223	ENST00000544268	DST	Q03001	7570 aa	Known RBP	5.01	□□□□□ -1.61
CHFR-223	ENST00000544268	LOC100996750	A0A140TA64	210 aa		5.01	□□□□□ -1.61
CHFR-223	ENST00000544268	KRTAP19-4	Q3LI73	84 aa		5	□□□□□ -1.61
CHFR-223	ENST00000544268	MT1G	P13640	62 aa		4.98	□□□□□ -1.61
CHFR-223	ENST00000544268	LCE5A	Q5TCM9	118 aa		4.95	□□□□□ -1.62
CHFR-223	ENST00000544268	MT1M	Q8N339	61 aa		4.95	□□□□□ -1.62
CHFR-223	ENST00000544268	SPRR2E	P22531	72 aa		4.92	□□□□□ -1.62
CHFR-223	ENST00000544268	SPRR2B	P35325	72 aa		4.92	□□□□□ -1.62
CHFR-223	ENST00000544268	SPRR2A	P35326	72 aa		4.92	□□□□□ -1.62
CHFR-223	ENST00000544268	NEB	P20929	6669 aa		4.91	□□□□□ -1.62
CHFR-223	ENST00000544268	LCE1A	Q5T7P2	110 aa		4.91	□□□□□ -1.62
CHFR-223	ENST00000544268	SPRR2D	P22532	72 aa		4.74	□□□□□ -1.65
CHFR-223	ENST00000544268	KRTAP12-4	P60329	112 aa		4.74	□□□□□ -1.65
CHFR-223	ENST00000544268	KRTAP2-2	Q9BYT5	123 aa		4.74	□□□□□ -1.65
CHFR-223	ENST00000544268	SYNE1	Q8NF91	8797 aa	Known RBP	4.59	□□□□□ -1.67
CHFR-223	ENST00000544268	LCE3B	Q5TA77	95 aa		4.56	□□□□□ -1.68
CHFR-223	ENST00000544268	KRTAP20-1	Q3LI63	56 aa		4.55	□□□□□ -1.68
CHFR-223	ENST00000544268	KRTAP4-6	Q9BYQ5	205 aa		4.52	□□□□□ -1.69
CHFR-223	ENST00000544268	KRTAP4-9	Q9BYQ8	210 aa		4.5	□□□□□ -1.69
CHFR-223	ENST00000544268	LCE4A	Q5TA78	99 aa		4.46	□□□□□ -1.69
CHFR-223	ENST00000544268	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.45	□□□□□ -1.7
CHFR-223	ENST00000544268	KRTAP6-1	Q3LI64	71 aa		4.43	□□□□□ -1.7
CHFR-223	ENST00000544268	MT1A	P04731	61 aa		4.36	□□□□□ -1.71
CHFR-223	ENST00000544268	KRTAP4-12	Q9BQ66	201 aa		4.35	□□□□□ -1.71
CHFR-223	ENST00000544268	LCE1E	Q5T753	118 aa		4.31	□□□□□ -1.72
CHFR-223	ENST00000544268	OBSCN	Q5VST9	7968 aa		4.3	□□□□□ -1.72
CHFR-223	ENST00000544268	PRM1	P04553	51 aa		4.24	□□□□□ -1.73
CHFR-223	ENST00000544268	KRTAP9-9	Q9BYP9	154 aa		4.23	□□□□□ -1.73
CHFR-223	ENST00000544268	KRTAP9-4	Q9BYQ2	154 aa		4.23	□□□□□ -1.73
CHFR-223	ENST00000544268	KRTAP5-4	Q6L8H1	288 aa		4.22	□□□□□ -1.73
CHFR-223	ENST00000544268	LCE3E	Q5T5B0	92 aa		4.2	□□□□□ -1.74
CHFR-223	ENST00000544268	LCE3D	Q9BYE3	92 aa		4.2	□□□□□ -1.74
CHFR-223	ENST00000544268	LCE1D	Q5T752	114 aa		4.14	□□□□□ -1.75
CHFR-223	ENST00000544268	MT4	P47944	62 aa		4.13	□□□□□ -1.75
CHFR-223	ENST00000544268	HMCN1	Q96RW7	5635 aa		4.1	□□□□□ -1.75
CHFR-223	ENST00000544268	KRTAP6-2	Q3LI66	62 aa		4.02	□□□□□ -1.77
CHFR-223	ENST00000544268	KRTAP20-2	Q3LI61	65 aa		3.96	□□□□□ -1.77
CHFR-223	ENST00000544268	MT3	P25713	68 aa		3.94	□□□□□ -1.78
CHFR-223	ENST00000544268	LCE1F	Q5T754	118 aa		3.88	□□□□□ -1.79
CHFR-223	ENST00000544268	KRTAP5-2	Q701N4	177 aa		3.84	□□□□□ -1.8
CHFR-223	ENST00000544268	KRTAP5-3	Q6L8H2	238 aa		3.81	□□□□□ -1.8
CHFR-223	ENST00000544268	AHNAK2	Q8IVF2	5795 aa		3.77	□□□□□ -1.81
CHFR-223	ENST00000544268	GPR98	Q8WXG9	6306 aa		3.76	□□□□□ -1.81
CHFR-223	ENST00000544268	KRTAP4-11	Q9BYQ6	195 aa		3.67	□□□□□ -1.82
CHFR-223	ENST00000544268	KRTAP4-2	Q9BYR5	136 aa		3.59	□□□□□ -1.83
CHFR-223	ENST00000544268	KRTAP5-10	Q6L8G5	202 aa		3.55	□□□□□ -1.84
CHFR-223	ENST00000544268	MUC5AC	P98088	5654 aa		3.38	□□□□□ -1.87
CHFR-223	ENST00000544268	KRTAP5-8	O75690	187 aa		3.34	□□□□□ -1.87
CHFR-223	ENST00000544268	KRTAP5-1	Q6L8H4	278 aa		3.33	□□□□□ -1.88
CHFR-223	ENST00000544268	KRTAP5-7	Q6L8G8	165 aa		3.29	□□□□□ -1.88
CHFR-223	ENST00000544268	LCE1B	Q5T7P3	118 aa		3.25	□□□□□ -1.89
CHFR-223	ENST00000544268	LCE1C	Q5T751	118 aa		3.18	□□□□□ -1.9
CHFR-223	ENST00000544268	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.13	□□□□□ -1.91
CHFR-223	ENST00000544268	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.97	□□□□□ -1.93
CHFR-223	ENST00000544268	AHNAK	Q09666	5890 aa	Known RBP	2.95	□□□□□ -1.94
CHFR-223	ENST00000544268	MUC19	Q7Z5P9	8384 aa		2.93	□□□□□ -1.94
CHFR-223	ENST00000544268	KRTAP21-2	Q3LI59	83 aa		2.85	□□□□□ -1.95
CHFR-223	ENST00000544268	KRTAP5-11	Q6L8G4	156 aa		2.8	□□□□□ -1.96
CHFR-223	ENST00000544268	KRTAP21-1	Q3LI58	79 aa		2.8	□□□□□ -1.96
CHFR-223	ENST00000544268	KRTAP4-4	Q9BYR3	166 aa		2.73	□□□□□ -1.97
CHFR-223	ENST00000544268	PHGR1	C9JFL3	82 aa		2.42	□□□□□ -2.02
CHFR-223	ENST00000544268	MUC16	Q8WXI7	14507 aa		1.56	□□□□□ -2.16

Retrieved 78 of 20,778 RNA–protein pairs in 219.4 ms