RNA–Protein interactions for RNA: ENST00000542817.1

NPIPB3-210, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 5 BASIC

Gene NPIPB3, Length 1,342 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-210ENST00000542817 KRTAP5-9P26371 169 aa4.16□□□□□ -1.74
NPIPB3-210ENST00000542817 KRTAP4-7Q9BYR0 210 aa4.13□□□□□ -1.75
NPIPB3-210ENST00000542817 KRTAP8-1Q8IUC2 63 aa4.1□□□□□ -1.75
NPIPB3-210ENST00000542817 NEBP20929 6669 aa4.09□□□□□ -1.75
NPIPB3-210ENST00000542817 SPRR5A0A1B0GTR4 108 aa4.08□□□□□ -1.76
NPIPB3-210ENST00000542817 KRTAP4-12Q9BQ66 201 aa4.06□□□□□ -1.76
NPIPB3-210ENST00000542817 TNP1P09430 55 aa4.05□□□□□ -1.76
NPIPB3-210ENST00000542817 KRTAP19-7Q3SYF9 63 aa4.04□□□□□ -1.76
NPIPB3-210ENST00000542817 SPRR2FQ96RM1 72 aa4.03□□□□□ -1.76
NPIPB3-210ENST00000542817 LCE3AQ5TA76 89 aa4.01□□□□□ -1.77
NPIPB3-210ENST00000542817 KRTAP20-1Q3LI63 56 aa3.98□□□□□ -1.77
NPIPB3-210ENST00000542817 KRTAP5-3Q6L8H2 238 aa3.98□□□□□ -1.77
NPIPB3-210ENST00000542817 KRTAP4-2Q9BYR5 136 aa3.98□□□□□ -1.77
NPIPB3-210ENST00000542817 KRTAP19-5Q3LI72 72 aa3.97□□□□□ -1.77
NPIPB3-210ENST00000542817 MT1EP04732 61 aa3.96□□□□□ -1.77
NPIPB3-210ENST00000542817 LCE1AQ5T7P2 110 aa3.96□□□□□ -1.77
NPIPB3-210ENST00000542817 LCE1DQ5T752 114 aa3.93□□□□□ -1.78
NPIPB3-210ENST00000542817 GPR98Q8WXG9 6306 aa3.93□□□□□ -1.78
NPIPB3-210ENST00000542817 KRTAP4-9Q9BYQ8 210 aa3.91□□□□□ -1.78
NPIPB3-210ENST00000542817 SPRR2EP22531 72 aa3.9□□□□□ -1.79
NPIPB3-210ENST00000542817 SPRR2BP35325 72 aa3.9□□□□□ -1.79
NPIPB3-210ENST00000542817 SPRR2AP35326 72 aa3.9□□□□□ -1.79
NPIPB3-210ENST00000542817 INE1O15225 51 aa3.84□□□□□ -1.79
NPIPB3-210ENST00000542817 KRTAP12-3P60328 96 aa3.84□□□□□ -1.79
NPIPB3-210ENST00000542817 LCE5AQ5TCM9 118 aa3.84□□□□□ -1.79
NPIPB3-210ENST00000542817 KRTAP19-3Q7Z4W3 81 aa3.83□□□□□ -1.8
NPIPB3-210ENST00000542817 MT1LQ93083 61 aa3.83□□□□□ -1.8
NPIPB3-210ENST00000542817 MT1GP13640 62 aa3.76□□□□□ -1.81
NPIPB3-210ENST00000542817 SPRR2DP22532 72 aa3.76□□□□□ -1.81
NPIPB3-210ENST00000542817 KRTAP2-3P0C7H8 128 aa3.74□□□□□ -1.81
NPIPB3-210ENST00000542817 KRTAP2-4Q9BYR9 128 aa3.74□□□□□ -1.81
NPIPB3-210ENST00000542817 MT1MQ8N339 61 aa3.73□□□□□ -1.81
NPIPB3-210ENST00000542817 DSTQ03001 7570 aaKnown RBP3.71□□□□□ -1.82
NPIPB3-210ENST00000542817 KRTAP4-3Q9BYR4 195 aa3.68□□□□□ -1.82
NPIPB3-210ENST00000542817 KRTAP4-11Q9BYQ6 195 aa3.67□□□□□ -1.82
NPIPB3-210ENST00000542817 KRTAP2-2Q9BYT5 123 aa3.61□□□□□ -1.83
NPIPB3-210ENST00000542817 KRTAP2-1Q9BYU5 128 aa3.61□□□□□ -1.83
NPIPB3-210ENST00000542817 KRTAP19-4Q3LI73 84 aa3.59□□□□□ -1.83
NPIPB3-210ENST00000542817 LCE3CQ5T5A8 94 aa3.58□□□□□ -1.84
NPIPB3-210ENST00000542817 KRTAP9-6A8MVA2 160 aa3.46□□□□□ -1.85
NPIPB3-210ENST00000542817 KRTAP5-5Q701N2 237 aaPredicted RBP3.45□□□□□ -1.86
NPIPB3-210ENST00000542817 KRTAP5-4Q6L8H1 288 aa3.43□□□□□ -1.86
NPIPB3-210ENST00000542817 HMCN1Q96RW7 5635 aa3.41□□□□□ -1.86
NPIPB3-210ENST00000542817 LCE4AQ5TA78 99 aa3.37□□□□□ -1.87
NPIPB3-210ENST00000542817 AHNAK2Q8IVF2 5795 aa3.32□□□□□ -1.88
NPIPB3-210ENST00000542817 SYNE1Q8NF91 8797 aaKnown RBP3.32□□□□□ -1.88
NPIPB3-210ENST00000542817 MT4P47944 62 aa3.27□□□□□ -1.89
NPIPB3-210ENST00000542817 KRTAP6-1Q3LI64 71 aa3.24□□□□□ -1.89
NPIPB3-210ENST00000542817 MT1AP04731 61 aa3.23□□□□□ -1.89
NPIPB3-210ENST00000542817 KRTAP20-2Q3LI61 65 aa3.19□□□□□ -1.9
NPIPB3-210ENST00000542817 KRTAP12-4P60329 112 aa3.16□□□□□ -1.9
NPIPB3-210ENST00000542817 KRTAP5-10Q6L8G5 202 aa3.16□□□□□ -1.9
NPIPB3-210ENST00000542817 KRTAP5-7Q6L8G8 165 aa3.13□□□□□ -1.91
NPIPB3-210ENST00000542817 KRTAP5-2Q701N4 177 aa3.06□□□□□ -1.92
NPIPB3-210ENST00000542817 AHNAKQ09666 5890 aaKnown RBP3.02□□□□□ -1.93
NPIPB3-210ENST00000542817 KRTAP6-2Q3LI66 62 aa3.01□□□□□ -1.93
NPIPB3-210ENST00000542817 MUC5BQ9HC84 5762 aaPredicted RBP2.92□□□□□ -1.94
NPIPB3-210ENST00000542817 MT3P25713 68 aa2.92□□□□□ -1.94
NPIPB3-210ENST00000542817 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.86□□□□□ -1.95
NPIPB3-210ENST00000542817 MUC5ACP98088 5654 aa2.82□□□□□ -1.96
NPIPB3-210ENST00000542817 OBSCNQ5VST9 7968 aa2.82□□□□□ -1.96
NPIPB3-210ENST00000542817 KRTAP5-8O75690 187 aa2.75□□□□□ -1.97
NPIPB3-210ENST00000542817 KRTAP5-1Q6L8H4 278 aa2.69□□□□□ -1.98
NPIPB3-210ENST00000542817 LCE1EQ5T753 118 aa2.64□□□□□ -1.99
NPIPB3-210ENST00000542817 LCE3EQ5T5B0 92 aa2.63□□□□□ -1.99
NPIPB3-210ENST00000542817 LCE3DQ9BYE3 92 aa2.61□□□□□ -1.99
NPIPB3-210ENST00000542817 PRM1P04553 51 aa2.51□□□□□ -2.01
NPIPB3-210ENST00000542817 KRTAP5-11Q6L8G4 156 aa2.49□□□□□ -2.01
NPIPB3-210ENST00000542817 LCE1CQ5T751 118 aa2.46□□□□□ -2.02
NPIPB3-210ENST00000542817 LCE1BQ5T7P3 118 aa2.46□□□□□ -2.02
NPIPB3-210ENST00000542817 KRTAP4-4Q9BYR3 166 aa2.39□□□□□ -2.03
NPIPB3-210ENST00000542817 LCE1FQ5T754 118 aa2.2□□□□□ -2.06
NPIPB3-210ENST00000542817 KRTAP21-2Q3LI59 83 aa2.16□□□□□ -2.06
NPIPB3-210ENST00000542817 PHGR1C9JFL3 82 aa1.9□□□□□ -2.11
NPIPB3-210ENST00000542817 KRTAP21-1Q3LI58 79 aa1.72□□□□□ -2.13
NPIPB3-210ENST00000542817 MUC19Q7Z5P9 8384 aa1.72□□□□□ -2.13
NPIPB3-210ENST00000542817 MUC16Q8WXI7 14507 aa1.24□□□□□ -2.21
Retrieved 77 of 20,778 RNA–protein pairs in 84.2 ms