RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 KRTAP2-4Q9BYR9 128 aa6.43□□□□□ -1.38
LIG1-204ENST00000542460 KRTAP19-7Q3SYF9 63 aa6.4□□□□□ -1.39
LIG1-204ENST00000542460 KRTAP19-5Q3LI72 72 aa6.36□□□□□ -1.39
LIG1-204ENST00000542460 LCE1AQ5T7P2 110 aa6.36□□□□□ -1.39
LIG1-204ENST00000542460 MT1EP04732 61 aa6.32□□□□□ -1.4
LIG1-204ENST00000542460 KRTAP23-1A1A580 65 aa6.3□□□□□ -1.4
LIG1-204ENST00000542460 SPRR2DP22532 72 aa6.27□□□□□ -1.41
LIG1-204ENST00000542460 PP632Q6XCG6 107 aa6.22□□□□□ -1.41
LIG1-204ENST00000542460 KRTAP2-2Q9BYT5 123 aa6.22□□□□□ -1.41
LIG1-204ENST00000542460 KRTAP2-1Q9BYU5 128 aa6.22□□□□□ -1.41
LIG1-204ENST00000542460 KRTAP12-3P60328 96 aa6.21□□□□□ -1.42
LIG1-204ENST00000542460 KRTAP19-3Q7Z4W3 81 aa6.18□□□□□ -1.42
LIG1-204ENST00000542460 LCE5AQ5TCM9 118 aa6.13□□□□□ -1.43
LIG1-204ENST00000542460 MT1LQ93083 61 aa6.12□□□□□ -1.43
LIG1-204ENST00000542460 LCE3BQ5TA77 95 aa6.1□□□□□ -1.43
LIG1-204ENST00000542460 MT1GP13640 62 aa6.09□□□□□ -1.43
LIG1-204ENST00000542460 MT1MQ8N339 61 aa5.98□□□□□ -1.45
LIG1-204ENST00000542460 KRTAP15-1Q3LI76 137 aa5.97□□□□□ -1.45
LIG1-204ENST00000542460 KRTAP19-4Q3LI73 84 aa5.92□□□□□ -1.46
LIG1-204ENST00000542460 DSTQ03001 7570 aaKnown RBP5.89□□□□□ -1.47
LIG1-204ENST00000542460 KRTAP4-7Q9BYR0 210 aa5.84□□□□□ -1.48
LIG1-204ENST00000542460 KRTAP4-3Q9BYR4 195 aa5.81□□□□□ -1.48
LIG1-204ENST00000542460 LCE3CQ5T5A8 94 aa5.77□□□□□ -1.49
LIG1-204ENST00000542460 KRTAP4-9Q9BYQ8 210 aa5.7□□□□□ -1.5
LIG1-204ENST00000542460 LUZP6Q538Z0 58 aa5.68□□□□□ -1.5
LIG1-204ENST00000542460 NDUFAF8A1L188 74 aa5.67□□□□□ -1.5
LIG1-204ENST00000542460 H3BS24 57 aa5.62□□□□□ -1.51
LIG1-204ENST00000542460 GPR98Q8WXG9 6306 aa5.61□□□□□ -1.51
LIG1-204ENST00000542460 SPRR5A0A1B0GTR4 108 aa5.56□□□□□ -1.52
LIG1-204ENST00000542460 LCE1DQ5T752 114 aa5.55□□□□□ -1.52
LIG1-204ENST00000542460 LCE4AQ5TA78 99 aa5.52□□□□□ -1.53
LIG1-204ENST00000542460 HMCN1Q96RW7 5635 aa5.51□□□□□ -1.53
LIG1-204ENST00000542460 LOC100996750A0A140TA64 210 aa5.5□□□□□ -1.53
LIG1-204ENST00000542460 MT4P47944 62 aa5.5□□□□□ -1.53
LIG1-204ENST00000542460 KRTAP5-5Q701N2 237 aaPredicted RBP5.44□□□□□ -1.54
LIG1-204ENST00000542460 KRTAP5-4Q6L8H1 288 aa5.43□□□□□ -1.54
LIG1-204ENST00000542460 KRTAP9-6A8MVA2 160 aa5.41□□□□□ -1.54
LIG1-204ENST00000542460 AHNAK2Q8IVF2 5795 aa5.32□□□□□ -1.56
LIG1-204ENST00000542460 KRTAP4-6Q9BYQ5 205 aa5.32□□□□□ -1.56
LIG1-204ENST00000542460 A0A0A0MQY5 61 aa5.23□□□□□ -1.57
LIG1-204ENST00000542460 MT1AP04731 61 aa5.21□□□□□ -1.58
LIG1-204ENST00000542460 KRTAP12-4P60329 112 aa5.2□□□□□ -1.58
LIG1-204ENST00000542460 KRTAP5-10Q6L8G5 202 aa5.18□□□□□ -1.58
LIG1-204ENST00000542460 KRTAP6-1Q3LI64 71 aa5.15□□□□□ -1.58
LIG1-204ENST00000542460 SYNE1Q8NF91 8797 aaKnown RBP5.12□□□□□ -1.59
LIG1-204ENST00000542460 KRTAP20-2Q3LI61 65 aa5.11□□□□□ -1.59
LIG1-204ENST00000542460 KRTAP5-3Q6L8H2 238 aa5.05□□□□□ -1.6
LIG1-204ENST00000542460 KRTAP9-4Q9BYQ2 154 aa5□□□□□ -1.61
LIG1-204ENST00000542460 KRTAP5-7Q6L8G8 165 aa4.97□□□□□ -1.61
LIG1-204ENST00000542460 INE1O15225 51 aa4.83□□□□□ -1.64
LIG1-204ENST00000542460 KRTAP6-2Q3LI66 62 aa4.83□□□□□ -1.64
LIG1-204ENST00000542460 KRTAP5-2Q701N4 177 aa4.83□□□□□ -1.64
LIG1-204ENST00000542460 MT3P25713 68 aa4.77□□□□□ -1.65
LIG1-204ENST00000542460 KRTAP4-11Q9BYQ6 195 aa4.67□□□□□ -1.66
LIG1-204ENST00000542460 KRTAP5-8O75690 187 aa4.51□□□□□ -1.69
LIG1-204ENST00000542460 OBSCNQ5VST9 7968 aa4.5□□□□□ -1.69
LIG1-204ENST00000542460 MUC5BQ9HC84 5762 aaPredicted RBP4.42□□□□□ -1.7
LIG1-204ENST00000542460 AHNAKQ09666 5890 aaKnown RBP4.37□□□□□ -1.71
LIG1-204ENST00000542460 MUC5ACP98088 5654 aa4.36□□□□□ -1.71
LIG1-204ENST00000542460 KRTAP9-9Q9BYP9 154 aa4.31□□□□□ -1.72
LIG1-204ENST00000542460 LCE1EQ5T753 118 aa4.26□□□□□ -1.73
LIG1-204ENST00000542460 LCE3DQ9BYE3 92 aa4.26□□□□□ -1.73
LIG1-204ENST00000542460 KRTAP5-1Q6L8H4 278 aa4.26□□□□□ -1.73
LIG1-204ENST00000542460 LCE3EQ5T5B0 92 aa4.08□□□□□ -1.76
LIG1-204ENST00000542460 LCE1BQ5T7P3 118 aa3.96□□□□□ -1.78
LIG1-204ENST00000542460 KRTAP4-2Q9BYR5 136 aa3.96□□□□□ -1.78
LIG1-204ENST00000542460 LCE1CQ5T751 118 aa3.95□□□□□ -1.78
LIG1-204ENST00000542460 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.65□□□□□ -1.82
LIG1-204ENST00000542460 PRM1P04553 51 aa3.58□□□□□ -1.84
LIG1-204ENST00000542460 KRTAP5-11Q6L8G4 156 aa3.53□□□□□ -1.84
LIG1-204ENST00000542460 KRTAP4-12Q9BQ66 201 aa3.51□□□□□ -1.85
LIG1-204ENST00000542460 KRTAP21-2Q3LI59 83 aa3.39□□□□□ -1.87
LIG1-204ENST00000542460 LCE1FQ5T754 118 aa3.34□□□□□ -1.88
LIG1-204ENST00000542460 PHGR1C9JFL3 82 aa3.04□□□□□ -1.92
LIG1-204ENST00000542460 KRTAP4-4Q9BYR3 166 aa3.03□□□□□ -1.92
LIG1-204ENST00000542460 MUC19Q7Z5P9 8384 aa2.76□□□□□ -1.97
LIG1-204ENST00000542460 KRTAP21-1Q3LI58 79 aa2.3□□□□□ -2.04
LIG1-204ENST00000542460 MUC16Q8WXI7 14507 aa1.97□□□□□ -2.09
Retrieved 78 of 20,778 RNA–protein pairs in 90.8 ms