RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 LCE3AQ5TA76 89 aa4.16□□□□□ -1.74
CHFR-219ENST00000541341 KRTAP19-4Q3LI73 84 aa4.11□□□□□ -1.75
CHFR-219ENST00000541341 KRTAP2-3P0C7H8 128 aa4.09□□□□□ -1.75
CHFR-219ENST00000541341 SPRR2FQ96RM1 72 aa4.09□□□□□ -1.75
CHFR-219ENST00000541341 KRTAP2-4Q9BYR9 128 aa4.09□□□□□ -1.75
CHFR-219ENST00000541341 SPRR2EP22531 72 aa4.08□□□□□ -1.76
CHFR-219ENST00000541341 SPRR2BP35325 72 aa4.08□□□□□ -1.76
CHFR-219ENST00000541341 SPRR2AP35326 72 aa4.08□□□□□ -1.76
CHFR-219ENST00000541341 KRTAP12-3P60328 96 aa4.08□□□□□ -1.76
CHFR-219ENST00000541341 KRTAP10-12P60413 245 aa4.05□□□□□ -1.76
CHFR-219ENST00000541341 MT1XP80297 61 aa4.05□□□□□ -1.76
CHFR-219ENST00000541341 KRTAP4-8Q9BYQ9 185 aa3.99□□□□□ -1.77
CHFR-219ENST00000541341 LCE1AQ5T7P2 110 aa3.95□□□□□ -1.78
CHFR-219ENST00000541341 KRTAP2-2Q9BYT5 123 aa3.95□□□□□ -1.78
CHFR-219ENST00000541341 KRTAP2-1Q9BYU5 128 aa3.95□□□□□ -1.78
CHFR-219ENST00000541341 SPRR2DP22532 72 aa3.94□□□□□ -1.78
CHFR-219ENST00000541341 KRTAP4-8A0A0G2JLE6 195 aa3.92□□□□□ -1.78
CHFR-219ENST00000541341 KRTAP4-12Q9BQ66 201 aa3.88□□□□□ -1.79
CHFR-219ENST00000541341 LCE3BQ5TA77 95 aa3.87□□□□□ -1.79
CHFR-219ENST00000541341 LCE3CQ5T5A8 94 aa3.86□□□□□ -1.79
CHFR-219ENST00000541341 KRTAP10-7P60409 375 aaPredicted RBP3.85□□□□□ -1.79
CHFR-219ENST00000541341 GPR98Q8WXG9 6306 aa3.73□□□□□ -1.81
CHFR-219ENST00000541341 KRTAP19-5Q3LI72 72 aa3.71□□□□□ -1.82
CHFR-219ENST00000541341 KRTAP9-9Q9BYP9 154 aa3.7□□□□□ -1.82
CHFR-219ENST00000541341 KRTAP9-4Q9BYQ2 154 aa3.7□□□□□ -1.82
CHFR-219ENST00000541341 KRTAP4-9Q9BYQ8 210 aa3.7□□□□□ -1.82
CHFR-219ENST00000541341 DSTQ03001 7570 aaKnown RBP3.7□□□□□ -1.82
CHFR-219ENST00000541341 LCE4AQ5TA78 99 aa3.63□□□□□ -1.83
CHFR-219ENST00000541341 KRTAP19-7Q3SYF9 63 aa3.62□□□□□ -1.83
CHFR-219ENST00000541341 LCE1DQ5T752 114 aa3.59□□□□□ -1.83
CHFR-219ENST00000541341 MT1EP04732 61 aa3.57□□□□□ -1.84
CHFR-219ENST00000541341 LCE5AQ5TCM9 118 aa3.54□□□□□ -1.84
CHFR-219ENST00000541341 MT4P47944 62 aa3.51□□□□□ -1.85
CHFR-219ENST00000541341 KRTAP19-3Q7Z4W3 81 aa3.51□□□□□ -1.85
CHFR-219ENST00000541341 KRTAP4-7Q9BYR0 210 aa3.49□□□□□ -1.85
CHFR-219ENST00000541341 HMCN1Q96RW7 5635 aa3.47□□□□□ -1.85
CHFR-219ENST00000541341 KRTAP9-6A8MVA2 160 aa3.46□□□□□ -1.86
CHFR-219ENST00000541341 MT1LQ93083 61 aa3.46□□□□□ -1.86
CHFR-219ENST00000541341 AHNAK2Q8IVF2 5795 aa3.45□□□□□ -1.86
CHFR-219ENST00000541341 MT1GP13640 62 aa3.44□□□□□ -1.86
CHFR-219ENST00000541341 KRTAP4-3Q9BYR4 195 aa3.39□□□□□ -1.87
CHFR-219ENST00000541341 MT1MQ8N339 61 aa3.38□□□□□ -1.87
CHFR-219ENST00000541341 KRTAP4-11Q9BYQ6 195 aa3.36□□□□□ -1.87
CHFR-219ENST00000541341 KRTAP5-10Q6L8G5 202 aa3.35□□□□□ -1.87
CHFR-219ENST00000541341 KRTAP4-2Q9BYR5 136 aa3.32□□□□□ -1.88
CHFR-219ENST00000541341 KRTAP5-4Q6L8H1 288 aa3.28□□□□□ -1.88
CHFR-219ENST00000541341 KRTAP12-4P60329 112 aa3.25□□□□□ -1.89
CHFR-219ENST00000541341 MT1AP04731 61 aa3.23□□□□□ -1.89
CHFR-219ENST00000541341 KRTAP5-3Q6L8H2 238 aa3.23□□□□□ -1.89
CHFR-219ENST00000541341 KRTAP5-7Q6L8G8 165 aa3.22□□□□□ -1.89
CHFR-219ENST00000541341 KRTAP20-2Q3LI61 65 aa3.16□□□□□ -1.9
CHFR-219ENST00000541341 KRTAP5-5Q701N2 237 aaPredicted RBP3.1□□□□□ -1.91
CHFR-219ENST00000541341 SYNE1Q8NF91 8797 aaKnown RBP3.08□□□□□ -1.92
CHFR-219ENST00000541341 LCE3EQ5T5B0 92 aa3.05□□□□□ -1.92
CHFR-219ENST00000541341 LCE3DQ9BYE3 92 aa3.04□□□□□ -1.92
CHFR-219ENST00000541341 KRTAP6-1Q3LI64 71 aa2.9□□□□□ -1.95
CHFR-219ENST00000541341 KRTAP5-8O75690 187 aa2.86□□□□□ -1.95
CHFR-219ENST00000541341 PRM1P04553 51 aa2.85□□□□□ -1.95
CHFR-219ENST00000541341 OBSCNQ5VST9 7968 aa2.85□□□□□ -1.95
CHFR-219ENST00000541341 AHNAKQ09666 5890 aaKnown RBP2.85□□□□□ -1.95
CHFR-219ENST00000541341 KRTAP5-2Q701N4 177 aa2.84□□□□□ -1.95
CHFR-219ENST00000541341 MUC5ACP98088 5654 aa2.82□□□□□ -1.96
CHFR-219ENST00000541341 MUC5BQ9HC84 5762 aaPredicted RBP2.82□□□□□ -1.96
CHFR-219ENST00000541341 KRTAP6-2Q3LI66 62 aa2.77□□□□□ -1.97
CHFR-219ENST00000541341 MT3P25713 68 aa2.75□□□□□ -1.97
CHFR-219ENST00000541341 KRTAP5-1Q6L8H4 278 aa2.6□□□□□ -1.99
CHFR-219ENST00000541341 LCE1EQ5T753 118 aa2.42□□□□□ -2.02
CHFR-219ENST00000541341 LCE1BQ5T7P3 118 aa2.38□□□□□ -2.03
CHFR-219ENST00000541341 KRTAP5-11Q6L8G4 156 aa2.25□□□□□ -2.05
CHFR-219ENST00000541341 LCE1CQ5T751 118 aa2.24□□□□□ -2.05
CHFR-219ENST00000541341 LCE1FQ5T754 118 aa2.21□□□□□ -2.06
CHFR-219ENST00000541341 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.16□□□□□ -2.06
CHFR-219ENST00000541341 PHGR1C9JFL3 82 aa2□□□□□ -2.09
CHFR-219ENST00000541341 KRTAP21-2Q3LI59 83 aa1.93□□□□□ -2.1
CHFR-219ENST00000541341 KRTAP21-1Q3LI58 79 aa1.9□□□□□ -2.11
CHFR-219ENST00000541341 KRTAP4-4Q9BYR3 166 aa1.84□□□□□ -2.11
CHFR-219ENST00000541341 MUC19Q7Z5P9 8384 aa1.77□□□□□ -2.13
CHFR-219ENST00000541341 MUC16Q8WXI7 14507 aa1.2□□□□□ -2.22
Retrieved 78 of 20,778 RNA–protein pairs in 93.9 ms