RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.25□□□□□ -1.57
SFSWAP-210ENST00000541286 OBSCNQ5VST9 7968 aa5.23□□□□□ -1.57
SFSWAP-210ENST00000541286 LCE3CQ5T5A8 94 aa5.16□□□□□ -1.58
SFSWAP-210ENST00000541286 SPRR2FQ96RM1 72 aa5.15□□□□□ -1.58
SFSWAP-210ENST00000541286 KRTAP4-7Q9BYR0 210 aa5.12□□□□□ -1.59
SFSWAP-210ENST00000541286 KRTAP9-6A8MVA2 160 aa5.12□□□□□ -1.59
SFSWAP-210ENST00000541286 KRTAP19-7Q3SYF9 63 aa5.11□□□□□ -1.59
SFSWAP-210ENST00000541286 KRTAP9-7A8MTY7 169 aa5.04□□□□□ -1.6
SFSWAP-210ENST00000541286 MT1EP04732 61 aa4.98□□□□□ -1.61
SFSWAP-210ENST00000541286 KRTAP4-3Q9BYR4 195 aa4.92□□□□□ -1.62
SFSWAP-210ENST00000541286 KRTAP5-9P26371 169 aa4.91□□□□□ -1.62
SFSWAP-210ENST00000541286 SYNE1Q8NF91 8797 aaKnown RBP4.9□□□□□ -1.62
SFSWAP-210ENST00000541286 KRTAP6-3Q3LI67 103 aa4.89□□□□□ -1.63
SFSWAP-210ENST00000541286 SPRR2EP22531 72 aa4.88□□□□□ -1.63
SFSWAP-210ENST00000541286 SPRR2BP35325 72 aa4.88□□□□□ -1.63
SFSWAP-210ENST00000541286 SPRR2AP35326 72 aa4.88□□□□□ -1.63
SFSWAP-210ENST00000541286 LCE1AQ5T7P2 110 aa4.86□□□□□ -1.63
SFSWAP-210ENST00000541286 MT1LQ93083 61 aa4.86□□□□□ -1.63
SFSWAP-210ENST00000541286 NEBP20929 6669 aa4.84□□□□□ -1.63
SFSWAP-210ENST00000541286 KRTAP2-3P0C7H8 128 aa4.8□□□□□ -1.64
SFSWAP-210ENST00000541286 KRTAP2-4Q9BYR9 128 aa4.8□□□□□ -1.64
SFSWAP-210ENST00000541286 KRTAP2-1Q9BYU5 128 aa4.8□□□□□ -1.64
SFSWAP-210ENST00000541286 KRTAP19-3Q7Z4W3 81 aa4.79□□□□□ -1.64
SFSWAP-210ENST00000541286 LOC100996750A0A140TA64 210 aa4.76□□□□□ -1.65
SFSWAP-210ENST00000541286 LCE5AQ5TCM9 118 aa4.73□□□□□ -1.65
SFSWAP-210ENST00000541286 MT1MQ8N339 61 aa4.71□□□□□ -1.66
SFSWAP-210ENST00000541286 MT1GP13640 62 aa4.69□□□□□ -1.66
SFSWAP-210ENST00000541286 SPRR2DP22532 72 aa4.67□□□□□ -1.66
SFSWAP-210ENST00000541286 KRTAP12-4P60329 112 aa4.64□□□□□ -1.67
SFSWAP-210ENST00000541286 LCE3BQ5TA77 95 aa4.5□□□□□ -1.69
SFSWAP-210ENST00000541286 KRTAP4-9Q9BYQ8 210 aa4.5□□□□□ -1.69
SFSWAP-210ENST00000541286 KRTAP19-4Q3LI73 84 aa4.48□□□□□ -1.69
SFSWAP-210ENST00000541286 KRTAP20-1Q3LI63 56 aa4.37□□□□□ -1.71
SFSWAP-210ENST00000541286 MT4P47944 62 aa4.25□□□□□ -1.73
SFSWAP-210ENST00000541286 KRTAP2-2Q9BYT5 123 aa4.23□□□□□ -1.73
SFSWAP-210ENST00000541286 HMCN1Q96RW7 5635 aa4.21□□□□□ -1.74
SFSWAP-210ENST00000541286 KRTAP6-1Q3LI64 71 aa4.2□□□□□ -1.74
SFSWAP-210ENST00000541286 KRTAP5-5Q701N2 237 aaPredicted RBP4.19□□□□□ -1.74
SFSWAP-210ENST00000541286 KRTAP4-6Q9BYQ5 205 aa4.18□□□□□ -1.74
SFSWAP-210ENST00000541286 PRM1P04553 51 aa4.17□□□□□ -1.74
SFSWAP-210ENST00000541286 LCE1DQ5T752 114 aa4.1□□□□□ -1.75
SFSWAP-210ENST00000541286 LCE3DQ9BYE3 92 aa4.06□□□□□ -1.76
SFSWAP-210ENST00000541286 KRTAP5-4Q6L8H1 288 aa4.03□□□□□ -1.76
SFSWAP-210ENST00000541286 MT1AP04731 61 aa4.02□□□□□ -1.77
SFSWAP-210ENST00000541286 LCE3EQ5T5B0 92 aa3.99□□□□□ -1.77
SFSWAP-210ENST00000541286 KRTAP6-2Q3LI66 62 aa3.91□□□□□ -1.78
SFSWAP-210ENST00000541286 LCE4AQ5TA78 99 aa3.91□□□□□ -1.78
SFSWAP-210ENST00000541286 KRTAP20-2Q3LI61 65 aa3.89□□□□□ -1.79
SFSWAP-210ENST00000541286 LCE1EQ5T753 118 aa3.87□□□□□ -1.79
SFSWAP-210ENST00000541286 KRTAP9-4Q9BYQ2 154 aa3.87□□□□□ -1.79
SFSWAP-210ENST00000541286 MUC19Q7Z5P9 8384 aa3.76□□□□□ -1.81
SFSWAP-210ENST00000541286 KRTAP5-3Q6L8H2 238 aa3.72□□□□□ -1.81
SFSWAP-210ENST00000541286 AHNAK2Q8IVF2 5795 aa3.68□□□□□ -1.82
SFSWAP-210ENST00000541286 MT3P25713 68 aa3.64□□□□□ -1.83
SFSWAP-210ENST00000541286 KRTAP5-2Q701N4 177 aa3.61□□□□□ -1.83
SFSWAP-210ENST00000541286 GPR98Q8WXG9 6306 aa3.53□□□□□ -1.84
SFSWAP-210ENST00000541286 LCE1FQ5T754 118 aa3.47□□□□□ -1.85
SFSWAP-210ENST00000541286 KRTAP4-11Q9BYQ6 195 aa3.44□□□□□ -1.86
SFSWAP-210ENST00000541286 MUC5ACP98088 5654 aa3.42□□□□□ -1.86
SFSWAP-210ENST00000541286 KRTAP5-10Q6L8G5 202 aa3.4□□□□□ -1.86
SFSWAP-210ENST00000541286 KRTAP5-8O75690 187 aa3.31□□□□□ -1.88
SFSWAP-210ENST00000541286 LCE1BQ5T7P3 118 aa3.27□□□□□ -1.89
SFSWAP-210ENST00000541286 KRTAP5-1Q6L8H4 278 aa3.26□□□□□ -1.89
SFSWAP-210ENST00000541286 MUC5BQ9HC84 5762 aaPredicted RBP3.25□□□□□ -1.89
SFSWAP-210ENST00000541286 KRTAP4-2Q9BYR5 136 aa3.09□□□□□ -1.91
SFSWAP-210ENST00000541286 KRTAP5-7Q6L8G8 165 aa3.06□□□□□ -1.92
SFSWAP-210ENST00000541286 KRTAP9-9Q9BYP9 154 aa2.95□□□□□ -1.94
SFSWAP-210ENST00000541286 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
SFSWAP-210ENST00000541286 KRTAP4-12Q9BQ66 201 aa2.9□□□□□ -1.95
SFSWAP-210ENST00000541286 AHNAKQ09666 5890 aaKnown RBP2.8□□□□□ -1.96
SFSWAP-210ENST00000541286 KRTAP4-4Q9BYR3 166 aa2.72□□□□□ -1.97
SFSWAP-210ENST00000541286 KRTAP21-2Q3LI59 83 aa2.69□□□□□ -1.98
SFSWAP-210ENST00000541286 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.65□□□□□ -1.99
SFSWAP-210ENST00000541286 KRTAP5-11Q6L8G4 156 aa2.59□□□□□ -1.99
SFSWAP-210ENST00000541286 KRTAP21-1Q3LI58 79 aa2.44□□□□□ -2.02
SFSWAP-210ENST00000541286 PHGR1C9JFL3 82 aa2.29□□□□□ -2.04
SFSWAP-210ENST00000541286 MUC16Q8WXI7 14507 aa1.42□□□□□ -2.18
Retrieved 77 of 20,778 RNA–protein pairs in 142.8 ms